5GS9 Signaling Protein date Aug 15, 2016
title Crystal Structure Of Castor1-Arginine
authors T.Zhang, J.Ding
compound source
Molecule: Gats-Like Protein 3
Chain: A, B, C, D
Synonym: Cellular Arginine Sensor For Mtorc1 Protein 1,Cast
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Gatsl3, Castor1
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_strain: Bl21(De3) Codon Plus
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pet28a
symmetry Space Group: P 1 21 1
R_factor 0.175 R_Free 0.224
crystal
cell
length a length b length c angle alpha angle beta angle gamma
93.644 83.564 97.810 90.00 116.61 90.00
method X-Ray Diffractionresolution 2.50 Å
ligand ARG enzyme
Gene
Ontology
ChainFunctionProcessComponent
A, D, C, B


Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (405 Kb) [Save to disk]
  • Biological Unit Coordinates (5gs9.pdb1.gz) 204 Kb
  • Biological Unit Coordinates (5gs9.pdb2.gz) 200 Kb
  • LPC: Ligand-Protein Contacts for 5GS9
  • CSU: Contacts of Structural Units for 5GS9
  • Structure Factors (810 Kb)
  • Retrieve 5GS9 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 5GS9 from S2C, [Save to disk]
  • Re-refined 5gs9 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 5GS9 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 5GS9
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • Fold representative 5gs9 from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5gs9_D] [5gs9_C] [5gs9] [5gs9_B] [5gs9_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 5GS9
  • Community annotation for 5GS9 at PDBWiki (http://pdbwiki.org)

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