5GSA Transferase Transferase Inhibitor date Aug 15, 2016
title Eed In Complex With An Allosteric Prc2 Inhibitor
authors K.Zhao, M.Zhao, X.Luo, H.Zhang
compound source
Molecule: Polycomb Protein Eed
Chain: A, B
Fragment: Unp Residues 76-441
Synonym: Heed,Wd Protein Associating With Integrin Cytoplas 1,Wait-1;
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Eed
Expression_system: Escherichia Coli
Expression_system_taxid: 562

Molecule: Histone-Lysine N-Methyltransferase Ezh2
Chain: C, D
Synonym: Enx-1,Enhancer Of Zeste Homolog 2,Lysine N-Methylt 6;
Engineered: Yes

Synthetic: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
symmetry Space Group: P 21 21 2
R_factor 0.182 R_Free 0.255
length a length b length c angle alpha angle beta angle gamma
93.793 177.908 50.532 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.49 Å
ligand 73K enzyme Transferase E.C. BRENDA
A, B

D, C

Primary referenceAn allosteric PRC2 inhibitor targeting the H3K27me3 binding pocket of EED., Qi W, Zhao K, Gu J, Huang Y, Wang Y, Zhang H, Zhang M, Zhang J, Yu Z, Li L, Teng L, Chuai S, Zhang C, Zhao M, Chan H, Chen Z, Fang D, Fei Q, Feng L, Feng L, Gao Y, Ge H, Ge X, Li G, Lingel A, Lin Y, Liu Y, Luo F, Shi M, Wang L, Wang Z, Yu Y, Zeng J, Zeng C, Zhang L, Zhang Q, Zhou S, Oyang C, Atadja P, Li E, Nat Chem Biol. 2017 Apr;13(4):381-388. doi: 10.1038/nchembio.2304. Epub 2017 Jan , 30. PMID:28135235
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (138 Kb) [Save to disk]
  • Biological Unit Coordinates (5gsa.pdb1.gz) 68 Kb
  • Biological Unit Coordinates (5gsa.pdb2.gz) 69 Kb
  • LPC: Ligand-Protein Contacts for 5GSA
  • CSU: Contacts of Structural Units for 5GSA
  • Structure Factors (833 Kb)
  • Retrieve 5GSA in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 5GSA from S2C, [Save to disk]
  • Re-refined 5gsa structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 5GSA in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 5GSA
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • Fold representative 5gsa from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5gsa] [5gsa_D] [5gsa_B] [5gsa_A] [5gsa_C]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 5GSA
  • Community annotation for 5GSA at PDBWiki (http://pdbwiki.org)

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