5GTC	Structural Protein Dna	date	Aug 19, 2016
title	Crystal Structure Of Complex Between Dmap-Sh Conjugated With Kaposi'S Sarcoma Herpesvirus Lana Peptide (5-15) And Nucleo Particle
authors	Y.Arimura, D.Kato, H.Suto, H.Kurumizaka, S.A.Kawashima, K.Yamatsu M.Kanai
compound		source
Molecule: Histone H3.1 Chain: A, E Engineered: Yes		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Gene: Hist1h3a Expression_system: Escherichia Coli Bl21(De3) Expression_system_taxid: 469008 Expression_system_strain: Bl21(De3) Expression_system_vector_type: Plasmid Expression_system_plasmid: Pet15b
Molecule: Histone H4 Chain: B, F Engineered: Yes		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Gene: Hist1h4a Expression_system: Escherichia Coli Expression_system_taxid: 562 Expression_system_strain: Jm109 Expression_system_vector_type: Plasmid Expression_system_plasmid: Pet15b
Molecule: Histone H2a Type 1-Be Chain: C, G Engineered: Yes		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Gene: Hist1h2ab Expression_system: Escherichia Coli Bl21(De3) Expression_system_taxid: 469008 Expression_system_strain: Bl21(De3) Expression_system_plasmid: Plasmid
Molecule: Histone H2b Type 1-J Chain: D, H Engineered: Yes		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Gene: Hist1h2bj Expression_system: Escherichia Coli Bl21(De3) Expression_system_taxid: 469008 Expression_system_strain: Bl21(De3) Expression_system_vector_type: Plasmid Expression_system_plasmid: Pet15b
Molecule: Dna (146-Mer) Chain: I, J Engineered: Yes		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Expression_system: Escherichia Coli Expression_system_taxid: 562 Expression_system_strain: Dh5a Expression_system_vector_type: Plasmid Expression_system_plasmid: Pgem-T-Easy
Molecule: Lana Peptide Chain: K Engineered: Yes		Synthetic: Yes Organism_scientific: Human Herpesvirus 8 Organism_common: Hhv-8 Organism_taxid: 37296 Other_details: Dmap-Sh Conjugated With A Kaposi'S Sarcoma Herpesvirus Lana Peptide (5-15)
symmetry	Space Group: P 21 21 21	R_factor 0.211 R_Free 0.267
crystal cell	length a length b length c angle alpha angle beta angle gamma 107.225 109.017 176.194 90.00 90.00 90.00
method	X-Ray Diffraction	resolution	2.70 Å
ligand	CL, MN, NH2	enzyme
Gene Ontology	Chain Function Process Component A, E C, G F, B H, D

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (247 Kb) [Save to disk] Biological Unit Coordinates (5gtc.pdb1.gz) 239 Kb LPC: Ligand-Protein Contacts for 5GTC CSU: Contacts of Structural Units for 5GTC Structure Factors (977 Kb) Retrieve 5GTC in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 5GTC from S2C, [Save to disk] Re-refined 5gtc structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 5GTC in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 5GTC

Ramachandran plot from PDBSum

Structure-derived information

Dipole moment, from Dipole Server at Weizmann Institute

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [5gtc_J] [5gtc_K] [5gtc_H] [5gtc_I] [5gtc_C] [5gtc_A] [5gtc_G] [5gtc_D] [5gtc_F] [5gtc_E] [5gtc_B] SWISS-PROT database: Domain organization of by SWISSPFAM

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