5GTD date
authors
compound source
symmetry
R_factor
R_Free
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution
ligand A, AMP, CL, IMD, MG, OSB, PEG enzyme
Gene
Ontology
ChainFunctionProcessComponent
B, A


Primary referenceMechanistic Insights from the Crystal Structure of Bacillus subtilis o-Succinylbenzoyl-CoA Synthetase Complexed with the Adenylate Intermediate., Chen Y, Jiang Y, Guo Z, Biochemistry. 2016 Dec 6;55(48):6685-6695. Epub 2016 Nov 28. PMID:27933791
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (283 Kb) [Save to disk]
  • Biological Unit Coordinates (5gtd.pdb1.gz) 275 Kb
  • LPC: Ligand-Protein Contacts for 5GTD
  • CSU: Contacts of Structural Units for 5GTD
  • Structure Factors (512 Kb)
  • Retrieve 5GTD in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 5GTD from S2C, [Save to disk]
  • Re-refined 5gtd structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 5GTD in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5gtd] [5gtd_A] [5gtd_B]
  • SWISS-PROT database:

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