5GTU Hydrolase date Aug 23, 2016
title Structural And Mechanistic Insights Into Regulation Of The R Coat By Tbc1d5
authors D.Jia, M.Rosen
compound source
Molecule: Vacuolar Protein Sorting-Associated Protein 29
Chain: A
Fragment: Unp Residues 2-182
Synonym: Hvps29,Pep11 Homolog,Vesicle Protein Sorting 29
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Vps29, Dc15, Dc7, Mds007
Expression_system: Escherichia Coli
Expression_system_taxid: 562

Molecule: Tbc1 Domain Family Member 5
Chain: B
Fragment: Unp Residues 132-158
Engineered: Yes

Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Tbc1d5, Kiaa0210
Expression_system: Escherichia Coli
Expression_system_taxid: 562
symmetry Space Group: P 21 21 21
R_factor 0.139 R_Free 0.186
crystal
cell
length a length b length c angle alpha angle beta angle gamma
43.881 63.832 78.010 90.00 90.00 90.00
method X-Ray Diffractionresolution 1.50 Å
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceStructural and mechanistic insights into regulation of the retromer coat by TBC1d5., Jia D, Zhang JS, Li F, Wang J, Deng Z, White MA, Osborne DG, Phillips-Krawczak C, Gomez TS, Li H, Singla A, Burstein E, Billadeau DD, Rosen MK, Nat Commun. 2016 Nov 9;7:13305. doi: 10.1038/ncomms13305. PMID:27827364
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (78 Kb) [Save to disk]
  • Biological Unit Coordinates (5gtu.pdb1.gz) 73 Kb
  • CSU: Contacts of Structural Units for 5GTU
  • Structure Factors (760 Kb)
  • Retrieve 5GTU in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 5GTU from S2C, [Save to disk]
  • Re-refined 5gtu structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 5GTU in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 5GTU
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5gtu_A] [5gtu_B] [5gtu]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 5GTU
  • Community annotation for 5GTU at PDBWiki (http://pdbwiki.org)

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