5GVA
Replication
date
Sep 04, 2016
title
Wd40 Domain Of Human And-1
authors
C.C.Guan, J.Li
compound
source
Molecule
: Wd Repeat And Hmg-Box Dna-Binding Protein 1
Chain
: A
Synonym
: Acidic Nucleoplasmic Dna-Binding Protein 1,And-1
Engineered
: Yes
Mutation
: Yes
Organism_scientific
: Homo Sapiens
Organism_common
: Human
Organism_taxid
: 9606
Gene
: Wdhd1, And1
Expression_system
: Trichoplasta
Expression_system_taxid
: 303525
Expression_system_plasmid
: Pfastbac1
symmetry
Space Group
: P 43 21 2
R_factor
0.170
R_Free
0.188
crystal
cell
length a
length b
length c
angle alpha
angle beta
angle gamma
79.895
79.895
163.744
90.00
90.00
90.00
method
X-Ray Diffraction
resolution
1.85 Å
Data retrieval
Asymmetric unit, PDB entry:
[header only]
[complete with coordinates]
(64 Kb)
[Save to disk]
Biological Unit Coordinates
(5gva.pdb1.gz) 59 Kb
CSU:
Contacts of Structural Units
for 5GVA
Structure Factors
(330 Kb)
Retrieve 5GVA in
mmCIF
format
[Save to disk]
SEQRES to COORDINATES
correlation for
5GVA
from
S2C
,
[Save to disk]
Re-refined
5gva
structure from
PDB_REDO
, a databank with updated and optimised macromolecular X-ray diffraction structure models
View 5GVA in 3D
Proteopedia
, because life has more than 2D.
On
Jmol
, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
On
FirstGlance
, an excellent tool for a guided tour on the structure components, by
E. Martz
.
Visual 3D analysis of 5GVA
Ramachandran
plot from
PDBSum
Structure-derived information
Electron Density
related parameters from
EDS
Electron Density Server, at Upsala
Dipole
moment, from
Dipole Server
at Weizmann Institute
Sequence-derived information
View one-letter amino acid or nucleotide sequence for each chain:
[5gva]
[5gva_A]
SWISS-PROT
database:
Domain
organization of by
SWISSPFAM
Other resources with information on 5GVA
Community annotation for
5GVA
at
PDBWiki
(http://pdbwiki.org)
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