5GXI Structure of the Gemin5 WD40 domain in complex with AAUUUUUGAG date
authors Xu, C., He, H., Li, Y., Dong, A., Bountra, C., Arrowsmith, C.H., Edwards, A.M., Min, J., SGC, Structural.Genomics.Consortium.
compound source
symmetry
R_factor
R_Free 0.20738
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution 1.85
ligand UNX enzyme
Primary referenceStructural insights into Gemin5-guided selection of pre-snRNAs for snRNP assembly., Xu C, Ishikawa H, Izumikawa K, Li L, He H, Nobe Y, Yamauchi Y, Shahjee HM, Wu XH, Yu YT, Isobe T, Takahashi N, Min J, Genes Dev. 2016 Nov 1;30(21):2376-2390. Epub 2016 Nov 10. PMID:27881600
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (120 Kb) [Save to disk]
  • Biological Unit Coordinates (5gxi.pdb1.gz) 114 Kb
  • LPC: Ligand-Protein Contacts for 5GXI
  • CSU: Contacts of Structural Units for 5GXI
  • Structure Factors (1352 Kb)
  • Retrieve 5GXI in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 5GXI from S2C, [Save to disk]
  • Re-refined 5gxi structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 5GXI in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 5GXI
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5gxi_A] [5gxi] [5gxi_B]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domain found in 5GXI: [WD40 ] by SMART
    • Other resources with information on 5GXI
  • Community annotation for 5GXI at PDBWiki (http://pdbwiki.org)

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