5GYR		date
authors
compound		source
symmetry		R_factor R_Free
crystal cell	length a length b length c angle alpha angle beta angle gamma
method	X-Ray Diffraction	resolution
ligand	HEC	enzyme
Gene	ALVIN
Gene Ontology	Chain Function Process Component E, I, F, J, N, A, M, B
Primary reference	Formation and carbon monoxide-dependent dissociation of Allochromatium vinosum cytochrome c' oligomers using domain-swapped dimers., Yamanaka M, Hoshizumi M, Nagao S, Nakayama R, Shibata N, Higuchi Y, Hirota S, Protein Sci. 2017 Mar;26(3):464-474. doi: 10.1002/pro.3090. Epub 2017 Feb 14. PMID:27883268

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (367 Kb) [Save to disk] Biological Unit Coordinates (5gyr.pdb1.gz) 181 Kb Biological Unit Coordinates (5gyr.pdb2.gz) 180 Kb LPC: Ligand-Protein Contacts for 5GYR CSU: Contacts of Structural Units for 5GYR Structure Factors (2931 Kb) Retrieve 5GYR in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 5GYR from S2C, [Save to disk] Re-refined 5gyr structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 5GYR in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Structure-derived information

Dipole moment, from Dipole Server at Weizmann Institute

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [5gyr] [5gyr_A] [5gyr_B] [5gyr_E] [5gyr_F] [5gyr_I] [5gyr_J] [5gyr_M] [5gyr_N] SWISS-PROT database:

You may enter another PDB ID code

Go [Back], to the [PDB Lite page], to the [OCA Search page] or to the [PDB Home page]

---

OCA© by Jaime Prilusky, 1996-2014,2022,2024 Bioinformatics Unit Weizmann Institute of Science

---