5GZB Transcription Dna date Sep 28, 2016
title Crystal Structure Of Transcription Factor Tead4 In Complex W Dna
authors F.He, Z.B.Shi, Z.C.Zhou
compound source
Molecule: Transcriptional Enhancer Factor Tef-3
Chain: A
Fragment: Unp Residues 36-139
Synonym: Tea Domain Family Member 4,Tead-4,Transcription Fa Like 1,Transcription Factor Rtef-1;
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Tead4
Expression_system: Escherichia Coli Bl21(De3)
Expression_system_taxid: 469008
Expression_system_strain: Bl21(De3)

Molecule: Dna (5'-D(Tptpgpcpaptptpcpcptpcptpc)
Chain: B
Synonym: M-Cat Element
Engineered: Yes

Synthetic: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606

Molecule: Dna (5'-D(Gpapgpapgpgpapaptpgpcpapa)
Chain: C
Synonym: M-Cat Element
Engineered: Yes

Synthetic: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
symmetry Space Group: I 41 2 2
R_factor 0.229 R_Free 0.256
crystal
cell
length a length b length c angle alpha angle beta angle gamma
118.595 118.595 110.258 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.70 Å
ligand GOL, MSE, PO4 enzyme
Primary referenceDNA-binding mechanism of the Hippo pathway transcription factor TEAD4., Shi Z, He F, Chen M, Hua L, Wang W, Jiao S, Zhou Z, Oncogene. 2017 Apr 3. doi: 10.1038/onc.2017.24. PMID:28368398
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (31 Kb) [Save to disk]
  • Biological Unit Coordinates (5gzb.pdb1.gz) 26 Kb
  • LPC: Ligand-Protein Contacts for 5GZB
  • CSU: Contacts of Structural Units for 5GZB
  • Structure Factors (234 Kb)
  • Retrieve 5GZB in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 5GZB from S2C, [Save to disk]
  • Re-refined 5gzb structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 5GZB in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 5GZB
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • Fold representative 5gzb from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5gzb] [5gzb_C] [5gzb_B] [5gzb_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 5GZB
  • Community annotation for 5GZB at PDBWiki (http://pdbwiki.org)

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