5H1J Splicing date Oct 10, 2016
title Crystal Structure Of Wd40 Repeat Domains Of Gemin5
authors W.Jin, Y.Wang, C.P.Liu, N.Yang, M.Jin, Y.Cong, M.Wang, R.M.Xu
compound source
Molecule: Gem-Associated Protein 5
Chain: A
Fragment: Unp Residues 1-726
Synonym: Gemin5
Engineered: Yes
 Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Gemin5
Expression_system: Spodoptera Frugiperda
Expression_system_taxid: 7108
Expression_system_cell: Sf21
Expression_system_vector_type: Baculovirus
Expression_system_plasmid: Pfastbac-Htc
symmetry Space Group: P 1 21 1
R_factor 0.157 R_Free 0.199
crystal
cell
length a length b length c angle alpha angle beta angle gamma
60.258 123.592 61.732 90.00 119.27 90.00
method X-Ray Diffractionresolution 2.00 Å
Primary referenceStructural basis for snRNA recognition by the double-WD40 repeat domain of Gemin5., Jin W, Wang Y, Liu CP, Yang N, Jin M, Cong Y, Wang M, Xu RM, Genes Dev. 2016 Nov 1;30(21):2391-2403. Epub 2016 Nov 10. PMID:27881601
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (129 Kb) [Save to disk]
  • Biological Unit Coordinates (5h1j.pdb1.gz) 124 Kb
  • CSU: Contacts of Structural Units for 5H1J
  • Structure Factors (1743 Kb)
  • Retrieve 5H1J in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 5H1J from S2C, [Save to disk]
  • Re-refined 5h1j structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 5H1J in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 5H1J
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5h1j] [5h1j_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domain found in 5H1J: [WD40 ] by SMART
    • Other resources with information on 5H1J
  • Community annotation for 5H1J at PDBWiki (http://pdbwiki.org)

    • You may enter another PDB ID code
    Go [Back], to the [PDB Lite page], to the [OCA Search page] or to the [PDB Home page]
    OCA© by Jaime Prilusky, 1996-2014,2022
    Bioinformatics Unit
    Weizmann Institute of Science