5H2U	Transferase	date	Oct 18, 2016
title	Crystal Structure Of Ptk6 Kinase Domain Complexed With Dasat
authors	M.K.Thakur, S.Birudukota, S.Swaminathan, R.Tyagi, R.Gosu
compound		source
Molecule: Protein-Tyrosine Kinase 6 Chain: A, B, C, D Fragment: Kinase Domain, Unp Residues 185-446 Synonym: Breast Tumor Kinase,Tyrosine-Protein Kinase Brk Ec: 2.7.10.2 Engineered: Yes Mutation: Yes		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Gene: Ptk6 Expression_system: Spodoptera Frugiperda Expression_system_common: Fall Armyworm Expression_system_taxid: 7108 Expression_system_cell_line: Sf9 Expression_system_vector_type: Baculovirus Expression_system_plasmid: Pfastbac1
symmetry	Space Group: P 1	R_factor 0.206 R_Free 0.260
crystal cell	length a length b length c angle alpha angle beta angle gamma 49.881 77.018 87.413 81.36 75.76 74.92
method	X-Ray Diffraction	resolution	2.24 Å
ligand	1N1, CXM, GOL	enzyme	Transferase E.C.2.7.10.2 BRENDA
Gene Ontology	Chain Function Process Component A, D, C, B
Primary reference	Co-crystal structures of PTK6: With Dasatinib at 2.24 A, with novel imidazo[1,2-a]pyrazin-8-amine derivative inhibitor at 1.70 A resolution., Thakur MK, Birudukota S, Swaminathan S, Battula SK, Vadivelu S, Tyagi R, Gosu R, Biochem Biophys Res Commun. 2016 Dec 18. pii: S0006-291X(16)32070-8. doi:, 10.1016/j.bbrc.2016.12.030. PMID:27993680

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (195 Kb) [Save to disk] Biological Unit Coordinates (5h2u.pdb1.gz) 51 Kb Biological Unit Coordinates (5h2u.pdb2.gz) 49 Kb Biological Unit Coordinates (5h2u.pdb3.gz) 50 Kb Biological Unit Coordinates (5h2u.pdb4.gz) 50 Kb LPC: Ligand-Protein Contacts for 5H2U CSU: Contacts of Structural Units for 5H2U Structure Factors (669 Kb) Retrieve 5H2U in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 5H2U from S2C, [Save to disk] Re-refined 5h2u structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 5H2U in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 5H2U

Ramachandran plot from PDBSum

Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [5h2u_D] [5h2u_C] [5h2u_B] [5h2u] [5h2u_A] SWISS-PROT database: Domain organization of by SWISSPFAM

Other resources with information on 5H2U

Community annotation for 5H2U at PDBWiki (http://pdbwiki.org)

You may enter another PDB ID code

Go [Back], to the [PDB Lite page], to the [OCA Search page] or to the [PDB Home page]

---

OCA© by Jaime Prilusky, 1996-2014,2022 Bioinformatics Unit Weizmann Institute of Science

---