5H58 Transcription Dna date Nov 04, 2016
title Structural And Dynamics Studies Of The Tetr Family Protein, Streptomyces Coelicolor In Complex With Its Biological Oper Sequence
authors H.Bhukya, A.K.Jana, N.Sengupta, R.Anand
compound source
Molecule: Cprb
Chain: A, B, C, D
Engineered: Yes
 Organism_scientific: Streptomyces Coelicolor A3(2)
Organism_taxid: 100226
Strain: A3(2)
Gene: Cprb
Expression_system: Escherichia Coli 'Bl21-Gold(De3)Plyss Ag
Expression_system_taxid: 866768
Expression_system_strain: 'Bl21-Gold(De3)Plyss Ag'

Molecule: Dna (5'- D(Apgpgpcapgpgpcpgpgpcpapcpgpgptpcptpgp Pgptptpc)-3');
Chain: E
Engineered: Yes
Synthetic: Yes
Organism_scientific: Streptomyces Coelicolor A3(2)
Organism_taxid: 100226

Molecule: Dna (5'- D(Gpapacptpcpapapcpapgpapcpcpgptpgpcpcp Pgpcpcpt)-3');
Chain: F
Engineered: Yes
Synthetic: Yes
Organism_scientific: Streptomyces Coelicolor A3(2)
Organism_taxid: 100226
symmetry Space Group: P 32
R_factor 0.217 R_Free 0.282
crystal
cell
length a length b length c angle alpha angle beta angle gamma
149.810 149.810 70.460 90.00 90.00 120.00
method X-Ray Diffractionresolution 3.99 Å
Gene
Ontology
ChainFunctionProcessComponent
A, D, C, B


Primary referenceStructural and dynamics studies of the TetR family protein, CprB from Streptomyces coelicolor in complex with its biological operator sequence., Bhukya H, Jana AK, Sengupta N, Anand R, J Struct Biol. 2017 Mar 22. pii: S1047-8477(17)30052-7. doi:, 10.1016/j.jsb.2017.03.006. PMID:28343010
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (308 Kb) [Save to disk]
  • Biological Unit Coordinates (5h58.pdb1.gz) 302 Kb
  • CSU: Contacts of Structural Units for 5H58
  • Structure Factors (324 Kb)
  • Retrieve 5H58 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 5H58 from S2C, [Save to disk]
  • Re-refined 5h58 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 5H58 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 5H58
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5h58_A] [5h58_B] [5h58_C] [5h58_D] [5h58_E] [5h58_F] [5h58]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
    • Other resources with information on 5H58
  • Community annotation for 5H58 at PDBWiki (http://pdbwiki.org)

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