5H8O Immune System date Dec 23, 2015
title Crystal Structure Of An Asc-Binding Nanobody In Complex With Domain Of Asc
authors A.Lu, F.I.Schmidt, J.Ruan, C.Tang, H.Wu, H.L.Ploegh
compound source
Molecule: Vhh Nanobody
Chain: A
Engineered: Yes
Organism_scientific: Lama Glama
Organism_common: Llama
Organism_taxid: 9844
Expression_system: Escherichia Coli
Expression_system_taxid: 562

Molecule: Apoptosis-Associated Speck-Like Protein Containin
Chain: B
Synonym: Hasc,Caspase Recruitment Domain-Containing Protein Card Domain-Containing Protein,Target Of Methylation-Induce Silencing 1;
Engineered: Yes

Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Pycard, Asc, Card5, Tms1
Expression_system: Escherichia Coli
Expression_system_taxid: 562
symmetry Space Group: P 1 2 1
R_factor 0.300 R_Free 0.356
length a length b length c angle alpha angle beta angle gamma
53.625 30.996 79.244 90.00 90.00 90.00
method X-Ray Diffractionresolution 4.21 Å

Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (51 Kb) [Save to disk]
  • Biological Unit Coordinates (5h8o.pdb1.gz) 46 Kb
  • CSU: Contacts of Structural Units for 5H8O
  • Structure Factors (26 Kb)
  • Retrieve 5H8O in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 5H8O from S2C, [Save to disk]
  • Re-refined 5h8o structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 5H8O in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 5H8O
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • Fold representative 5h8o from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5h8o_A] [5h8o] [5h8o_B]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domain found in 5H8O: [IGv ] by SMART
  • Other resources with information on 5H8O
  • Community annotation for 5H8O at PDBWiki (http://pdbwiki.org)

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