5H8Q	Transport Protein	date	Dec 23, 2015
title	Structure Of The Human Glun1glun2a Lbd In Complex With Gne8
authors	H.J.A.Wallweber, P.J.Lupardus
compound		source
Molecule: Glutamate Receptor Ionotropic, Nmda 2a,Glutamate Ionotropic, Nmda 2a; Chain: A Fragment: Unp Residues 401-539, Gt Linker, Unp Residues 661 Synonym: Glun2a, Glutamate [Nmda] Receptor Subunit Epsilon- Methyl D-Aspartate Receptor Subtype 2a, Hnr2a; Engineered: Yes		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Gene: Grin2a, Nmdar2a Expression_system: Escherichia Coli Expression_system_taxid: 562
Molecule: Glutamate Receptor Ionotropic, Nmda 1,Glutamate R Ionotropic, Nmda 1; Chain: B Fragment: Unp Residues 394-544, Gt Linker, Unp Residues 663 Synonym: Glun1, Glutamate [Nmda] Receptor Subunit Zeta-1, N Aspartate Receptor Subunit Nr1, Nmd-R1; Engineered: Yes		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Gene: Grin1, Nmdar1 Expression_system: Escherichia Coli Expression_system_taxid: 562
symmetry	Space Group: P 21 21 21	R_factor 0.177 R_Free 0.209
crystal cell	length a length b length c angle alpha angle beta angle gamma 54.729 90.048 125.198 90.00 90.00 90.00
method	X-Ray Diffraction	resolution	1.90 Å
ligand	5YE, ACT, GLU, GLY	enzyme
Gene Ontology	Chain Function Process Component A, B
Primary reference	Positive Allosteric Modulators of GluN2A-Containing NMDARs with Distinct Modes of Action and Impacts on Circuit Function., Hackos DH, Lupardus PJ, Grand T, Chen Y, Wang TM, Reynen P, Gustafson A, Wallweber HJ, Volgraf M, Sellers BD, Schwarz JB, Paoletti P, Sheng M, Zhou Q, Hanson JE, Neuron. 2016 Mar 2;89(5):983-99. doi: 10.1016/j.neuron.2016.01.016. Epub 2016 Feb, 11. PMID:26875626

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (101 Kb) [Save to disk] Biological Unit Coordinates (5h8q.pdb1.gz) 96 Kb LPC: Ligand-Protein Contacts for 5H8Q CSU: Contacts of Structural Units for 5H8Q Structure Factors (3290 Kb) Retrieve 5H8Q in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 5H8Q from S2C, [Save to disk] Re-refined 5h8q structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 5H8Q in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 5H8Q

Ramachandran plot from PDBSum

Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [5h8q_A] [5h8q] [5h8q_B] SWISS-PROT database: Domain organization of by SWISSPFAM Domains found in 5H8Q: [Lig_chan-Glu_bd] [PBPb] [PBPe ] by SMART

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