5H8T Retinol-Binding Protein date Dec 23, 2015
title Crystal Structure Of Human Cellular Retinol Binding Protein Complex With All-Trans-Retinol
authors M.Golczak, J.M.Arne, J.A.Silvaroli, P.D.Kiser, S.Banerjee
compound source
Molecule: Retinol-Binding Protein 1
Chain: A
Synonym: Cellular Retinol-Binding Protein,Crbp,Cellular Ret Binding Protein I,Crbp-I;
Engineered: Yes
 Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Rbp1, Crbp1
Expression_system: Escherichia Coli
Expression_system_taxid: 469008
Expression_system_strain: Bl21(De3)
symmetry Space Group: P 21 21 21
R_factor 0.118 R_Free 0.147
crystal
cell
length a length b length c angle alpha angle beta angle gamma
37.550 44.990 84.970 90.00 90.00 90.00
method X-Ray Diffractionresolution 1.21 Å
ligand RTL enzyme
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceLigand Binding Induces Conformational Changes in Human Cellular Retinol-binding Protein 1 (CRBP1) Revealed by Atomic Resolution Crystal Structures., Silvaroli JA, Arne JM, Chelstowska S, Kiser PD, Banerjee S, Golczak M, J Biol Chem. 2016 Apr 15;291(16):8528-40. doi: 10.1074/jbc.M116.714535. Epub 2016, Feb 21. PMID:26900151
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (87 Kb) [Save to disk]
  • Biological Unit Coordinates (5h8t.pdb1.gz) 82 Kb
  • LPC: Ligand-Protein Contacts for 5H8T
  • CSU: Contacts of Structural Units for 5H8T
  • Structure Factors (2919 Kb)
  • Retrieve 5H8T in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 5H8T from S2C, [Save to disk]
  • Re-refined 5h8t structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 5H8T in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 5H8T
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5h8t] [5h8t_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
    • Other resources with information on 5H8T
  • Community annotation for 5H8T at PDBWiki (http://pdbwiki.org)

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