5HAN Lyase date Dec 30, 2015
title Structure Function Studies Of R. Palustris Rubisco (S59f Mut Bound)
authors M.A.Arbing, J.G.Leong, V.A.Varaljay, S.Satagopan, J.A.North, F.R.
compound source
Molecule: Ribulose Bisphosphate Carboxylase
Chain: A, B, C, D, E, F, G, H, I, J, K, L
Synonym: Rubisco
Ec: 4.1.1.39
Engineered: Yes
Mutation: Yes
Organism_scientific: Rhodopseudomonas Palustris
Organism_taxid: 1076
Expression_system: Escherichia Coli Bl21(De3)
Expression_system_taxid: 469008
Expression_system_strain: Bl21(De3)
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pet28a
symmetry Space Group: P 1
R_factor 0.197 R_Free 0.237
crystal
cell
length a length b length c angle alpha angle beta angle gamma
75.880 110.370 167.360 89.87 101.70 105.00
method X-Ray Diffractionresolution 2.04 Å
ligand CAP, KCX, MG enzyme Lyase E.C.4.1.1.39 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
F, A, J, K, E, B, H, C, D, I, G, L


Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (3411 Kb) [Save to disk]
  • Biological Unit Coordinates (5han.pdb1.gz) 1706 Kb
  • Biological Unit Coordinates (5han.pdb2.gz) 1705 Kb
  • LPC: Ligand-Protein Contacts for 5HAN
  • CSU: Contacts of Structural Units for 5HAN
  • Structure Factors (2485 Kb)
  • Retrieve 5HAN in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 5HAN from S2C, [Save to disk]
  • Re-refined 5han structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 5HAN in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 5HAN
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • Fold representative 5han from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5han_K] [5han] [5han_C] [5han_H] [5han_L] [5han_D] [5han_B] [5han_F] [5han_I] [5han_E] [5han_J] [5han_G] [5han_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 5HAN
  • Community annotation for 5HAN at PDBWiki (http://pdbwiki.org)

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