5HAO Lyase date Dec 30, 2015
title Structure Function Studies Of R. Palustris Rubisco (M331a Mu Cabp-Bound)
authors M.A.Arbing, A.Shin, S.Satagopan, J.A.North, F.R.Tabita
compound source
Molecule: Ribulose Bisphosphate Carboxylase
Chain: A, B, C, D, E, F
Synonym: Rubisco
Ec: 4.1.1.39
Engineered: Yes
Mutation: Yes
Organism_scientific: Rhodopseudomonas Palustris
Organism_taxid: 1076
Expression_system: Escherichia Coli Bl21(De3)
Expression_system_taxid: 469008
Expression_system_strain: Bl21(De3)
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pet28a
symmetry Space Group: P 1
R_factor 0.201 R_Free 0.233
crystal
cell
length a length b length c angle alpha angle beta angle gamma
75.750 100.120 100.310 112.82 108.14 88.76
method X-Ray Diffractionresolution 2.18 Å
ligand CAP, KCX, MG enzyme Lyase E.C.4.1.1.39 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
F, A, D, C, E, B


Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (1281 Kb) [Save to disk]
  • Biological Unit Coordinates (5hao.pdb1.gz) 1271 Kb
  • LPC: Ligand-Protein Contacts for 5HAO
  • CSU: Contacts of Structural Units for 5HAO
  • Structure Factors (1044 Kb)
  • Retrieve 5HAO in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 5HAO from S2C, [Save to disk]
  • Re-refined 5hao structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 5HAO in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 5HAO
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5hao] [5hao_E] [5hao_D] [5hao_C] [5hao_F] [5hao_A] [5hao_B]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 5HAO
  • Community annotation for 5HAO at PDBWiki (http://pdbwiki.org)

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