5HB7 Transport Protein date Dec 31, 2015
title Crystal Structure Of Chaetomium Thermophilum Nup53 Rrm
authors D.H.Lin, T.Stuwe, A.Hoelz
compound source
Molecule: Nucleoporin Nup53
Chain: A
Synonym: Nuclear Pore Protein Nup53
Engineered: Yes
 Organism_scientific: Chaetomium Thermophilum (Strain Dsm 14 144.50 Imi 039719);
Organism_taxid: 759272
Strain: Dsm 1495 Cbs 144.50 Imi 039719
Gene: Nup53, Ctht_0012410
Expression_system: Escherichia Coli
Expression_system_taxid: 562
symmetry Space Group: P 21 21 21
R_factor 0.118 R_Free 0.132
crystal
cell
length a length b length c angle alpha angle beta angle gamma
34.990 50.370 60.030 90.00 90.00 90.00
method X-Ray Diffractionresolution 0.82 Å
ligand IOD enzyme
Gene CTHT
Primary referenceArchitecture of the symmetric core of the nuclear pore., Lin DH, Stuwe T, Schilbach S, Rundlet EJ, Perriches T, Mobbs G, Fan Y, Thierbach K, Huber FM, Collins LN, Davenport AM, Jeon YE, Hoelz A, Science. 2016 Apr 15;352(6283):aaf1015. doi: 10.1126/science.aaf1015. Epub 2016, Apr 14. PMID:27081075
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (84 Kb) [Save to disk]
  • Biological Unit Coordinates (5hb7.pdb1.gz) 79 Kb
  • LPC: Ligand-Protein Contacts for 5HB7
  • CSU: Contacts of Structural Units for 5HB7
  • Structure Factors (1614 Kb)
  • Retrieve 5HB7 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 5HB7 from S2C, [Save to disk]
  • Re-refined 5hb7 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 5HB7 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 5HB7
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5hb7_A] [5hb7]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
    • Other resources with information on 5HB7
  • Community annotation for 5HB7 at PDBWiki (http://pdbwiki.org)

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