5HBU Cell Cycle Dna date Jan 02, 2016
title Structure Of The E. Coli Nucleoid Occlusion Protein Slma Bou And The C-Terminal Tail Of The Cytoskeletal Cell Division P Ftsz
authors M.A.Schumacher, W.Zeng
compound source
Molecule: Nucleoid Occlusion Factor Slma
Chain: A, B, C, D, E, F, G, H
Fragment: Unp Residues 7-198
Synonym: Protein Ttk, Synthetically Lethal With A Defective System Protein A;
Engineered: Yes
Organism_scientific: Escherichia Coli (Strain K12)
Organism_taxid: 83333
Strain: K12
Gene: Slma, Ttk, Yicb, B3641, Jw5641
Expression_system: Escherichia Coli
Expression_system_taxid: 562

Molecule: Dna (5'-D(Gptpgpapgptpapcptpcpapc)-3'
Chain: W, Z, R, T
Engineered: Yes

Synthetic: Yes
Organism_scientific: Synthetic Construct
Organism_taxid: 32630

Molecule: Ftsz Ctt Peptide
Chain: K
Engineered: Yes

Synthetic: Yes
Organism_scientific: Synthetic Construct
Organism_taxid: 32630
symmetry Space Group: P 21 21 21
R_factor 0.226 R_Free 0.270
crystal
cell
length a length b length c angle alpha angle beta angle gamma
70.114 158.893 200.201 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.60 Å
Gene
Ontology
ChainFunctionProcessComponent
F, A, E, B, H, C, D, G


Primary referenceStructures of the nucleoid occlusion protein SlmA bound to DNA and the C-terminal domain of the cytoskeletal protein FtsZ., Schumacher MA, Zeng W, Proc Natl Acad Sci U S A. 2016 May 3;113(18):4988-93. doi:, 10.1073/pnas.1602327113. Epub 2016 Apr 18. PMID:27091999
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (536 Kb) [Save to disk]
  • Biological Unit Coordinates (5hbu.pdb1.gz) 266 Kb
  • Biological Unit Coordinates (5hbu.pdb2.gz) 263 Kb
  • CSU: Contacts of Structural Units for 5HBU
  • Structure Factors (1034 Kb)
  • Retrieve 5HBU in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 5HBU from S2C, [Save to disk]
  • Re-refined 5hbu structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 5HBU in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 5HBU
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5hbu_T] [5hbu_G] [5hbu_R] [5hbu_K] [5hbu_F] [5hbu_B] [5hbu_D] [5hbu_W] [5hbu_Z] [5hbu] [5hbu_C] [5hbu_E] [5hbu_H] [5hbu_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 5HBU
  • Community annotation for 5HBU at PDBWiki (http://pdbwiki.org)

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