5HC1 Hydrolase date Jan 04, 2016
title Structure Of Eav Nsp11 H141a Mutant At 3.10a
authors M.F.Zhang, Z.Z.Chen
compound source
Molecule: Non-Structural Protein 11
Chain: A, B, C, D
Engineered: Yes
Mutation: Yes
 Organism_scientific: Equine Arteritis Virus Bucyrus
Organism_common: Eav
Organism_taxid: 299386
Strain: Bucyrus
Gene: Rep, 1a-1b
Expression_system: Escherichia Coli
Expression_system_taxid: 562
symmetry Space Group: I 2 2 2
R_factor 0.208 R_Free 0.252
crystal
cell
length a length b length c angle alpha angle beta angle gamma
129.136 133.742 145.268 90.00 90.00 90.00
method X-Ray Diffractionresolution 3.10 Å
Primary referenceStructural biology of the arterivirus nsp11 endoribonucleases., Zhang M, Li X, Deng Z, Chen Z, Liu Y, Gao Y, Wu W, Chen Z, J Virol. 2016 Oct 19. pii: JVI.01309-16. PMID:27795409
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (140 Kb) [Save to disk]
  • Biological Unit Coordinates (5hc1.pdb1.gz) 69 Kb
  • Biological Unit Coordinates (5hc1.pdb2.gz) 69 Kb
  • CSU: Contacts of Structural Units for 5HC1
  • Structure Factors (179 Kb)
  • Retrieve 5HC1 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 5HC1 from S2C, [Save to disk]
  • Re-refined 5hc1 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 5HC1 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 5HC1
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1m5hc1, region C:2001-2145 [Jmol] [rasmolscript] [script source]
        - Domain d1k5hc1, region C:301-398 [Jmol] [rasmolscript] [script source]
        - Domain d1g5hc1, region C:343-469 [Jmol] [rasmolscript] [script source]
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5hc1] [5hc1_A] [5hc1_D] [5hc1_C] [5hc1_B]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
    • Other resources with information on 5HC1
  • Community annotation for 5HC1 at PDBWiki (http://pdbwiki.org)

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