5HDA	Immune System	date	Jan 05, 2016
title	Crystal Structure Of The Bs69 Coiled Coil-Mynd Domains Bound Ebna2 Pxlxp Motif
authors	J.Song, M.Harter
compound		source
Molecule: Zinc Finger Mynd Domain-Containing Protein 11 Chain: A, C Fragment: Unp Residues 480-602 Synonym: Adenovirus 5 E1a-Binding Protein,Bone Morphogeneti Receptor-Associated Molecule 1,Protein Bs69; Engineered: Yes		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Gene: Zmynd11, Bram1, Bs69 Expression_system: Escherichia Coli Expression_system_taxid: 562
Molecule: Epstein-Barr Nuclear Antigen 2 Chain: B, D Fragment: Unp Residues 381-389 Synonym: Ebv Nuclear Antigen 2 Engineered: Yes		Synthetic: Yes Organism_scientific: Human Herpesvirus 4 Organism_common: Hhv-4 Organism_taxid: 10377
symmetry	Space Group: P 1 21 1	R_factor 0.222 R_Free 0.262
crystal cell	length a length b length c angle alpha angle beta angle gamma 58.456 38.190 82.690 90.00 97.53 90.00
method	X-Ray Diffraction	resolution	2.39 Å
ligand	ZN	enzyme
Primary reference	BS69/ZMYND11 C-Terminal Domains Bind and Inhibit EBNA2., Harter MR, Liu CD, Shen CL, Gonzalez-Hurtado E, Zhang ZM, Xu M, Martinez E, Peng CW, Song J, PLoS Pathog. 2016 Feb 4;12(2):e1005414. doi: 10.1371/journal.ppat.1005414., eCollection 2016 Feb. PMID:26845565

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (49 Kb) [Save to disk] Biological Unit Coordinates (5hda.pdb1.gz) 44 Kb LPC: Ligand-Protein Contacts for 5HDA CSU: Contacts of Structural Units for 5HDA Structure Factors (230 Kb) Retrieve 5HDA in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 5HDA from S2C, [Save to disk] Re-refined 5hda structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 5HDA in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 5HDA

Ramachandran plot from PDBSum

Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [5hda_D] [5hda_B] [5hda] [5hda_C] [5hda_A] SWISS-PROT database: Domain organization of by SWISSPFAM

Other resources with information on 5HDA

Community annotation for 5HDA at PDBWiki (http://pdbwiki.org)

You may enter another PDB ID code

Go [Back], to the [PDB Lite page], to the [OCA Search page] or to the [PDB Home page]

---

OCA© by Jaime Prilusky, 1996-2014,2022 Bioinformatics Unit Weizmann Institute of Science

---