5HDK Transcription date Jan 05, 2016
title Crystal Structure Of Heat Shock Factor 2-Dbd
authors H.Feng, W.Liu, D.C.Wang
compound source
Molecule: Heat Shock Factor Protein 2
Chain: A, B, C, D
Fragment: Unp Residues 7-112
Synonym: Hsf 2,Heat Shock Transcription Factor 2,Hstf 2
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Hsf2, Hstf2
Expression_system: Escherichia Coli
Expression_system_taxid: 562
symmetry Space Group: P 21 21 21
R_factor 0.153 R_Free 0.174
length a length b length c angle alpha angle beta angle gamma
65.660 67.260 93.250 90.00 90.00 90.00
method X-Ray Diffractionresolution 1.32 Å
ligand CL, K, NA enzyme
A, D, C, B

Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (163 Kb) [Save to disk]
  • Biological Unit Coordinates (5hdk.pdb1.gz) 40 Kb
  • Biological Unit Coordinates (5hdk.pdb2.gz) 40 Kb
  • Biological Unit Coordinates (5hdk.pdb3.gz) 39 Kb
  • Biological Unit Coordinates (5hdk.pdb4.gz) 45 Kb
  • LPC: Ligand-Protein Contacts for 5HDK
  • CSU: Contacts of Structural Units for 5HDK
  • Structure Factors (2010 Kb)
  • Retrieve 5HDK in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 5HDK from S2C, [Save to disk]
  • Re-refined 5hdk structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 5HDK in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 5HDK
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • Fold representative 5hdk from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5hdk_A] [5hdk_C] [5hdk] [5hdk_D] [5hdk_B]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 5HDK
  • Community annotation for 5HDK at PDBWiki (http://pdbwiki.org)

  • You may enter another PDB ID code
    Go [Back], to the [PDB Lite page], to the [OCA Search page] or to the [PDB Home page]
    OCA© by Jaime Prilusky, 1996-2014
    Bioinformatics Unit
    Weizmann Institute of Science