5HGU Transcription date Jan 08, 2016
title Crystal Structure Of Human Transcription Factor Tead2 In Com Palmitate
authors X.Luo, H.Xiao
compound source
Molecule: Transcriptional Enhancer Factor Tef-4
Chain: A, B
Fragment: Residues 217-447
Synonym: Tea Domain Family Member 2,Tead-2
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Tead2, Tef4
Expression_system: Escherichia Coli
Expression_system_taxid: 562
symmetry Space Group: C 1 2 1
R_factor 0.185 R_Free 0.222
crystal
cell
length a length b length c angle alpha angle beta angle gamma
122.486 61.146 80.307 90.00 117.17 90.00
method X-Ray Diffractionresolution 2.05 Å
ligand PLM enzyme
Primary referenceAutopalmitoylation of TEAD proteins regulates transcriptional output of the Hippo pathway., Chan P, Han X, Zheng B, DeRan M, Yu J, Jarugumilli GK, Deng H, Pan D, Luo X, Wu X, Nat Chem Biol. 2016 Apr;12(4):282-9. doi: 10.1038/nchembio.2036. Epub 2016 Feb, 22. PMID:26900866
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (149 Kb) [Save to disk]
  • Biological Unit Coordinates (5hgu.pdb1.gz) 70 Kb
  • Biological Unit Coordinates (5hgu.pdb2.gz) 75 Kb
  • LPC: Ligand-Protein Contacts for 5HGU
  • CSU: Contacts of Structural Units for 5HGU
  • Structure Factors (375 Kb)
  • Retrieve 5HGU in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 5HGU from S2C, [Save to disk]
  • Re-refined 5hgu structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 5HGU in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 5HGU
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • Fold representative 5hgu from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5hgu_B] [5hgu_A] [5hgu]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 5HGU
  • Community annotation for 5HGU at PDBWiki (http://pdbwiki.org)

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