5HHM Immune System date Jan 11, 2016
title Crystal Structure Of The Jm22 Tcr In Complex With Hla-A0201 Complex With M1-F5l
authors S.Gras, T.M.Josephs, J.Rossjohn
compound source
Molecule: Hla Class I Histocompatibility Antigen, A-2 Alpha
Chain: A, F
Fragment: Unp Residues 25-300
Synonym: Mhc Class I Antigen A2
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Hla-A, Hlaa
Expression_system: Escherichia Coli
Expression_system_taxid: 469008
Expression_system_strain: Bl21(De3)
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pet

Molecule: Beta-2-Microglobulin
Chain: B, G
Fragment: Unp Residues 21-119
Engineered: Yes

Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: B2m, Cdabp0092, Hdcma22p
Expression_system: Escherichia Coli
Expression_system_taxid: 469008
Expression_system_strain: Bl21(De3)
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pet

Molecule: M1-F5l, Gilglvftl
Chain: C, H
Engineered: Yes

Synthetic: Yes
Organism_scientific: Synthetic Construct
Organism_taxid: 32630
Other_details: Synthetic Source

Molecule: Jm22 Tcr Alpha Chain
Chain: D, I
Engineered: Yes

Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Expression_system: Escherichia Coli
Expression_system_taxid: 469008
Expression_system_strain: Bl21(De3)
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pet

Molecule: Jm22 Tcr Beta Chain
Chain: E, J
Engineered: Yes

Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Expression_system: Escherichia Coli
Expression_system_taxid: 469008
Expression_system_strain: Bl21(De3)
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pet
symmetry Space Group: C 1 2 1
R_factor 0.216 R_Free 0.289
crystal
cell
length a length b length c angle alpha angle beta angle gamma
242.876 47.296 185.945 90.00 115.49 90.00
method X-Ray Diffractionresolution 2.50 Å
Gene
Ontology
ChainFunctionProcessComponent
D, I


G, B
  • cellular response to iron io...

  • Primary referenceMolecular basis for universal HLA-A*0201-restricted CD8+ T-cell immunity against influenza viruses., Valkenburg SA, Josephs TM, Clemens EB, Grant EJ, Nguyen TH, Wang GC, Price DA, Miller A, Tong SY, Thomas PG, Doherty PC, Rossjohn J, Gras S, Kedzierska K, Proc Natl Acad Sci U S A. 2016 Apr 19;113(16):4440-5. doi:, 10.1073/pnas.1603106113. Epub 2016 Mar 31. PMID:27036003
    Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (265 Kb) [Save to disk]
  • Biological Unit Coordinates (5hhm.pdb1.gz) 132 Kb
  • Biological Unit Coordinates (5hhm.pdb2.gz) 132 Kb
  • CSU: Contacts of Structural Units for 5HHM
  • Structure Factors (4515 Kb)
  • Retrieve 5HHM in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 5HHM from S2C, [Save to disk]
  • Re-refined 5hhm structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 5HHM in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 5HHM
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • Fold representative 5hhm from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5hhm] [5hhm_J] [5hhm_H] [5hhm_I] [5hhm_F] [5hhm_D] [5hhm_C] [5hhm_E] [5hhm_G] [5hhm_A] [5hhm_B]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domains found in 5HHM: [IG_like] [IGc1] [IGv ] by SMART
  • Other resources with information on 5HHM
  • Community annotation for 5HHM at PDBWiki (http://pdbwiki.org)

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