5HHO Immune System date Jan 11, 2016
title Crystal Structure Of The Jm22 Tcr In Complex With Hla-A0201 Complex With M1-G4e
authors S.Gras, T.M.Josephs, J.Rossjohn
compound source
Molecule: Hla Class I Histocompatibility Antigen, A-2 Alpha
Chain: A
Fragment: Unp Residues 25-300
Synonym: Mhc Class I Antigen A2
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Hla-A, Hlaa
Expression_system: Escherichia Coli
Expression_system_taxid: 469008
Expression_system_strain: Bl21(De3)
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pet

Molecule: Beta-2-Microglobulin
Chain: B
Fragment: Unp Residues 21-119
Engineered: Yes

Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: B2m, Cdabp0092, Hdcma22p
Expression_system: Escherichia Coli
Expression_system_taxid: 469008
Expression_system_strain: Bl21(De3)
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pet

Molecule: Jm22 Tcr Alpha Chain
Chain: D
Engineered: Yes

Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Expression_system: Escherichia Coli
Expression_system_taxid: 469008
Expression_system_strain: Bl21(De3)
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pet
Other_details: Synthetic Source

Molecule: Jm22 Tcr Beta Chain
Chain: E
Engineered: Yes

Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Expression_system: Escherichia Coli
Expression_system_taxid: 469008
Expression_system_strain: Bl21(De3)
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pet

Molecule: M1-G4e, Gilefvftl
Chain: C
Engineered: Yes

Synthetic: Yes
Organism_scientific: Synthetic Construct
Organism_taxid: 32630
symmetry Space Group: C 1 2 1
R_factor 0.236 R_Free 0.279
crystal
cell
length a length b length c angle alpha angle beta angle gamma
233.657 49.033 113.040 90.00 115.95 90.00
method X-Ray Diffractionresolution 2.95 Å
Gene
Ontology
ChainFunctionProcessComponent
B
  • cellular response to iron io...

  • D


    Primary referenceMolecular basis for universal HLA-A*0201-restricted CD8+ T-cell immunity against influenza viruses., Valkenburg SA, Josephs TM, Clemens EB, Grant EJ, Nguyen TH, Wang GC, Price DA, Miller A, Tong SY, Thomas PG, Doherty PC, Rossjohn J, Gras S, Kedzierska K, Proc Natl Acad Sci U S A. 2016 Apr 19;113(16):4440-5. doi:, 10.1073/pnas.1603106113. Epub 2016 Mar 31. PMID:27036003
    Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (139 Kb) [Save to disk]
  • Biological Unit Coordinates (5hho.pdb1.gz) 135 Kb
  • CSU: Contacts of Structural Units for 5HHO
  • Structure Factors (1671 Kb)
  • Retrieve 5HHO in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 5HHO from S2C, [Save to disk]
  • Re-refined 5hho structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 5HHO in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 5HHO
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • Fold representative 5hho from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5hho] [5hho_E] [5hho_D] [5hho_C] [5hho_A] [5hho_B]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domains found in 5HHO: [IG_like] [IGc1] [IGv ] by SMART
  • Other resources with information on 5HHO
  • Community annotation for 5HHO at PDBWiki (http://pdbwiki.org)

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