5HIK Transferase date Jan 12, 2016
title Crystal Structure Of Glycine Sarcosine N-Methyltransferase F Methanohalophilus Portucalensis In Complex With S-Adenosylm
authors Y.R.Lee, T.S.Lin, S.J.Lai, M.S.Liu, M.C.Lai, N.L.Chan
compound source
Molecule: Glycine Sarcosine N-Methyltransferase
Chain: A
Ec: 2.1.1.156
Engineered: Yes
Organism_scientific: Methanohalophilus Portucalensis Fdf-1
Organism_taxid: 523843
Strain: Fdf-1
Gene: Gsmt
Expression_system: Escherichia Coli Bl21(De3)
Expression_system_taxid: 469008
Expression_system_strain: Bl21(De3)
Expression_system_vector_type: Plasmid
symmetry Space Group: I 2 2 2
R_factor 0.166 R_Free 0.214
crystal
cell
length a length b length c angle alpha angle beta angle gamma
51.906 120.970 131.789 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.35 Å
ligand EDO, SAM enzyme Transferase E.C.2.1.1.156 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceStructural Analysis of Glycine Sarcosine N-methyltransferase from Methanohalophilus portucalensis Reveals Mechanistic Insights into the Regulation of Methyltransferase Activity., Lee YR, Lin TS, Lai SJ, Liu MS, Lai MC, Chan NL, Sci Rep. 2016 Dec 9;6:38071. doi: 10.1038/srep38071. PMID:27934872
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (90 Kb) [Save to disk]
  • Biological Unit Coordinates (5hik.pdb1.gz) 83 Kb
  • LPC: Ligand-Protein Contacts for 5HIK
  • CSU: Contacts of Structural Units for 5HIK
  • Structure Factors (294 Kb)
  • Retrieve 5HIK in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 5HIK from S2C, [Save to disk]
  • Re-refined 5hik structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 5HIK in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 5HIK
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5hik_A] [5hik]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 5HIK
  • Community annotation for 5HIK at PDBWiki (http://pdbwiki.org)

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