5HK5 Cytokine date Jan 13, 2016
title Structure Of The Grem2-Gdf5 Inhibitory Complex
authors K.Nolan, T.B.Thompson, R.J.Read
compound source
Molecule: Gremlin-2
Chain: E, F, G, H
Synonym: Cysteine Knot Superfamily 1,Bmp Antagonist 2,Prote To Dan And Cerberus,Prdc;
Engineered: Yes
Organism_scientific: Mus Musculus
Organism_common: Mouse
Organism_taxid: 10090
Gene: Grem2, Cktsf1b2, Prdc
Expression_system: Escherichia Coli
Expression_system_taxid: 562

Molecule: Growthdifferentiation Factor 5
Chain: A, B, C, D
Synonym: Gdf-5,Bone Morphogenetic Protein 14,Bmp-14,Cartila Morphogenetic Protein 1,Cdmp-1,Lipopolysaccharide-Associate 4,Lps-Associated Protein 4,Radotermin;
Engineered: Yes

Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Gdf5, Bmp14, Cdmp1
Expression_system: Escherichia Coli
Expression_system_taxid: 562
symmetry Space Group: P 21 2 21
R_factor 0.261 R_Free 0.282
crystal
cell
length a length b length c angle alpha angle beta angle gamma
114.721 125.791 125.930 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.90 Å
Gene
Ontology
ChainFunctionProcessComponent
A, B, C, D


F, E, H, G


Primary referenceStructure of Gremlin-2 in Complex with GDF5 Gives Insight into DAN-Family-Mediated BMP Antagonism., Nolan K, Kattamuri C, Rankin SA, Read RJ, Zorn AM, Thompson TB, Cell Rep. 2016 Aug 23;16(8):2077-86. doi: 10.1016/j.celrep.2016.07.046. Epub 2016, Aug 11. PMID:27524626
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (156 Kb) [Save to disk]
  • Biological Unit Coordinates (5hk5.pdb1.gz) 77 Kb
  • Biological Unit Coordinates (5hk5.pdb2.gz) 77 Kb
  • Biological Unit Coordinates (5hk5.pdb3.gz) 75 Kb
  • Biological Unit Coordinates (5hk5.pdb4.gz) 75 Kb
  • CSU: Contacts of Structural Units for 5HK5
  • Structure Factors (2732 Kb)
  • Retrieve 5HK5 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 5HK5 from S2C, [Save to disk]
  • Re-refined 5hk5 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 5HK5 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 5HK5
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5hk5_A] [5hk5_E] [5hk5_B] [5hk5_G] [5hk5_F] [5hk5_D] [5hk5_C] [5hk5] [5hk5_H]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domains found in 5HK5: [CT] [TGFB ] by SMART
  • Other resources with information on 5HK5
  • Community annotation for 5HK5 at PDBWiki (http://pdbwiki.org)

  • You may enter another PDB ID code
    Go [Back], to the [PDB Lite page], to the [OCA Search page] or to the [PDB Home page]
    OCA© by Jaime Prilusky, 1996-2014,2022
    Bioinformatics Unit
    Weizmann Institute of Science