OCA Atlas for 5HKV

5HKV

date

authors

compound

source

symmetry

R_factor

R_Free

crystal
cell

length a	length b	length c	angle alpha	angle beta	angle gamma

method

X-Ray Diffraction

resolution

ligand

3QB, CA, EOH, MG, MN, MPD, SPD

enzyme

Gene
Ontology

Chain	Function	Process	Component
2
3
A
B
C
D
E
G
H
I
J
K
L
M
N
O
P
Q
R
S
T
U
V
W
Z

Primary reference

Structural insights of lincosamides targeting the ribosome of Staphylococcus aureus., Matzov D, Eyal Z, Benhamou RI, Shalev-Benami M, Halfon Y, Krupkin M, Zimmerman E, Rozenberg H, Bashan A, Fridman M, Yonath A, Nucleic Acids Res. 2017 Sep 29;45(17):10284-10292. doi: 10.1093/nar/gkx658. PMID:28973455

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (3362 Kb) [Save to disk]

Biological Unit Coordinates (5hkv.pdb1.gz) 3329 Kb

LPC: Ligand-Protein Contacts for 5HKV

CSU: Contacts of Structural Units for 5HKV

Structure Factors (4072 Kb)

Retrieve 5HKV in mmCIF format [Save to disk]

SEQRES to COORDINATES correlation for 5HKV from S2C, [Save to disk]

Re-refined 5hkv structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 5HKV in 3D

Proteopedia, because life has more than 2D.

On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.

On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Structure-derived information

Dipole moment, from Dipole Server at Weizmann Institute

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [5hkv] [5hkv_2] [5hkv_3] [5hkv_A] [5hkv_B] [5hkv_C] [5hkv_D] [5hkv_E] [5hkv_G] [5hkv_H] [5hkv_I] [5hkv_J] [5hkv_K] [5hkv_L] [5hkv_M] [5hkv_N] [5hkv_O] [5hkv_P] [5hkv_Q] [5hkv_R] [5hkv_S] [5hkv_T] [5hkv_U] [5hkv_V] [5hkv_W] [5hkv_X] [5hkv_Y] [5hkv_Z]

SWISS-PROT database:

Go [Back], to the [PDB Lite page], to the [OCA Search page] or to the [PDB Home page]