5HLF Transferase Inhibitor Dna date Jan 15, 2016
title Structure Of Hiv-1 Reverse Transcriptase In Complex With A 3 Hairpin Template-Primer Dna Aptamer And An Alpha-Carboxypho Inhibitor
authors K.Das, E.Arnold
compound source
Molecule: Hiv-1 Reverse Transcriptase P66 Subunit
Chain: A, C
Synonym: Pr160gag-Pol
Ec: 2.7.7.49
Engineered: Yes
Mutation: Yes
Organism_scientific: Human Immunodeficiency Virus Type 1 Gr Subtype B (Isolate Bh10);
Organism_common: Hiv-1
Organism_taxid: 11678
Strain: Isolate Bh10
Gene: Gag-Pol
Expression_system: Escherichia Coli
Expression_system_taxid: 562

Molecule: Hiv-1 Reverse Transcriptase P51 Subunit
Chain: B, D
Synonym: Pr160gag-Pol
Ec: 2.7.7.49
Engineered: Yes

Organism_scientific: Human Immunodeficiency Virus Type 1 Gr Subtype B (Isolate Bh10);
Organism_common: Hiv-1
Organism_taxid: 11678
Strain: Isolate Bh10
Gene: Gag-Pol
Expression_system: Escherichia Coli
Expression_system_taxid: 562

Molecule: Dna (38-Mer)
Chain: E, F
Engineered: Yes

Organism_scientific: Synthetic Construct
Organism_taxid: 32630
Expression_system: Synthetic Construct
Expression_system_taxid: 32630
symmetry Space Group: P 1 21 1
R_factor 0.208 R_Free 0.257
crystal
cell
length a length b length c angle alpha angle beta angle gamma
90.060 128.560 132.410 90.00 101.46 90.00
method X-Ray Diffractionresolution 2.95 Å
ligand 64A, GOL, MG, OMC, SO4, SUC enzyme Transferase E.C.2.7.7.49 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A, C


D, B


Primary referenceExploring the role of the alpha-carboxyphosphonate moiety in the HIV-RT activity of alpha-carboxy nucleoside phosphonates., Mullins ND, Maguire NM, Ford A, Das K, Arnold E, Balzarini J, Maguire AR, Org Biomol Chem. 2016 Jan 27. PMID:26813581
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (365 Kb) [Save to disk]
  • Biological Unit Coordinates (5hlf.pdb1.gz) 182 Kb
  • Biological Unit Coordinates (5hlf.pdb2.gz) 180 Kb
  • LPC: Ligand-Protein Contacts for 5HLF
  • CSU: Contacts of Structural Units for 5HLF
  • Structure Factors (3165 Kb)
  • Retrieve 5HLF in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 5HLF from S2C, [Save to disk]
  • Re-refined 5hlf structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 5HLF in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 5HLF
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • Fold representative 5hlf from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5hlf_E] [5hlf_B] [5hlf] [5hlf_C] [5hlf_F] [5hlf_D] [5hlf_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 5HLF
  • Community annotation for 5HLF at PDBWiki (http://pdbwiki.org)

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