5HLL Hydrolase date Jan 15, 2016
title Re-Refinement Of 4g4a: Room-Temperature X-Ray Diffraction St Cisplatin And Its Binding To His15 Of Hewl After 14 Months Exposure In The Presence Of Dmso.
authors J.R.Helliwell
compound source
Molecule: Lysozyme C
Chain: A
Synonym: 1,4-Beta-N-Acetylmuramidase C,Allergen Gal D Iv
Ec: 3.2.1.17
Other_details: Hen Egg White Lyysozyme With Cisplatin With
 Organism_scientific: Gallus Gallus
Organism_common: Chicken
Organism_taxid: 9031
Tissue: Egg White
symmetry Space Group: P 43 21 2
R_factor 0.180 R_Free 0.224
crystal
cell
length a length b length c angle alpha angle beta angle gamma
79.144 79.144 37.997 90.00 90.00 90.00
method X-Ray Diffractionresolution 1.70 Å
ligand CL, DMS, NA, NH3, PT enzyme Hydrolase E.C.3.2.1.17 BRENDA
note 5HLL supersedes 4G4A
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceRe-refinement of 4g4a: room-temperature X-ray diffraction study of cisplatin and its binding to His15 of HEWL after 14 months chemical exposure in the presence of DMSO., Tanley SW, Schreurs AM, Kroon-Batenburg LM, Helliwell JR, Acta Crystallogr F Struct Biol Commun. 2016 Mar 1;72(Pt 3):253-254. Epub 2016 Feb, 19. PMID:26948967
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (46 Kb) [Save to disk]
  • Biological Unit Coordinates (5hll.pdb1.gz) 41 Kb
  • LPC: Ligand-Protein Contacts for 5HLL
  • CSU: Contacts of Structural Units for 5HLL
  • Structure Factors (282 Kb)
  • Retrieve 5HLL in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 5HLL from S2C, [Save to disk]
  • Re-refined 5hll structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 5HLL in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 5HLL
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5hll] [5hll_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domain found in 5HLL: [LYZ1 ] by SMART
    • Other resources with information on 5HLL
  • Community annotation for 5HLL at PDBWiki (http://pdbwiki.org)

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