5HMG Viral Protein date Sep 11, 1989
title Refinement Of The Influenza Virus Hemagglutinin By Simulated
authors W.I.Weis, A.T.Bruenger, J.J.Skehel, D.C.Wiley
compound source
Molecule: Hemagglutinin Ha1 Chain
Chain: A, C, E
Synonym: Hemagglutinin
Engineered: Yes
Organism_scientific: Influenza A Virus (Aaichi21968(H3n2
Organism_taxid: 387139
Strain: (Aaichi21968(H3n2))
Gene: Ha

Molecule: Hemagglutinin Ha2 Chain
Chain: B, D, F
Synonym: Hemagglutinin
Engineered: Yes

Organism_scientific: Influenza A Virus (Aaichi21968(H3n2
Organism_taxid: 387139
Strain: (Aaichi21968(H3n2))
Gene: Ha
symmetry Space Group: P 41
R_factor 0.220 R_Free NULL
crystal
cell
length a length b length c angle alpha angle beta angle gamma
162.600 162.600 177.400 90.00 90.00 90.00
method X-Ray Diffractionresolution 3.20 Å
ligand MAN, NAG, SIA enzyme
Gene
Ontology
ChainFunctionProcessComponent
A, C, E


F, D, B


Primary referenceRefinement of the influenza virus hemagglutinin by simulated annealing., Weis WI, Brunger AT, Skehel JJ, Wiley DC, J Mol Biol 1990 Apr 20;212(4):737-61. PMID:2329580
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (255 Kb) [Save to disk]
  • Biological Unit Coordinates (5hmg.pdb1.gz) 246 Kb
  • LPC: Ligand-Protein Contacts for 5HMG
  • CSU: Contacts of Structural Units for 5HMG
  • Likely Quarternary Molecular Structure file(s) for 5HMG
  • Structure Factors (297 Kb)
  • Retrieve 5HMG in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 5HMG from S2C, [Save to disk]
  • Re-refined 5hmg structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 5HMG in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 5HMG
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 5HMG, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d5hmga_, region A [Jmol] [rasmolscript] [script source]
        - Domain d5hmgb_, region B [Jmol] [rasmolscript] [script source]
        - Domain d5hmgc_, region C [Jmol] [rasmolscript] [script source]
        - Domain d5hmgd_, region D [Jmol] [rasmolscript] [script source]
        - Domain d5hmge_, region E [Jmol] [rasmolscript] [script source]
        - Domain d5hmgf_, region F [Jmol] [rasmolscript] [script source]
  • Fold representative 5hmg from FSSP and Dali (Families of Structurally Similar Proteins)
  • Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH
  • Summaries and structural analyses of PDB data files from PDBSum
  • Identification of Protein Pockets & Cavities at CASTp
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5hmg] [5hmg_C] [5hmg_F] [5hmg_A] [5hmg_E] [5hmg_B] [5hmg_D]
  • SWISS-PROT database: [P03437]
  • Domain organization of [HEMA_I68A0] by SWISSPFAM
  • Other resources with information on 5HMG
  • Community annotation for 5HMG at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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