5HMW Transferase Transferase Inhibitor date Jan 17, 2016
title Dengue Serotype 3 Rna-Dependent Rna Polymerase Bound To Comp
authors C.G.Noble
compound source
Molecule: Rna-Directed Rna Polymerase Ns5
Chain: A
Fragment: Unp Residues 2762-3390
Ec: 2.7.7.48
Engineered: Yes
Organism_scientific: Dengue Virus 3
Organism_taxid: 11069
Expression_system: Escherichia Coli
Expression_system_taxid: 562
symmetry Space Group: C 2 2 21
R_factor 0.188 R_Free 0.222
crystal
cell
length a length b length c angle alpha angle beta angle gamma
161.880 179.390 58.000 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.15 Å
ligand LNW, ZN enzyme Transferase E.C.2.7.7.48 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A


Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (108 Kb) [Save to disk]
  • Biological Unit Coordinates (5hmw.pdb1.gz) 103 Kb
  • LPC: Ligand-Protein Contacts for 5HMW
  • CSU: Contacts of Structural Units for 5HMW
  • Structure Factors (1283 Kb)
  • Retrieve 5HMW in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 5HMW from S2C, [Save to disk]
  • Re-refined 5hmw structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 5HMW in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 5HMW
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5hmw] [5hmw_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 5HMW
  • Community annotation for 5HMW at PDBWiki (http://pdbwiki.org)

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