5HRF Transferase Dna date Jan 23, 2016
title The Crystal Structure Of Asfvpolx: Dna5: Dgtp Ternary Comple
authors Y.Q.Chen, J.Zhang, J.H.Gan
compound source
Molecule: Dna Polymerase Beta-Like Protein
Chain: A, B
Synonym: Po174l, Polx
Engineered: Yes
Organism_scientific: African Swine Fever Virus
Organism_common: Asfv
Organism_taxid: 10497
Gene: O174l
Expression_system: Escherichia Coli
Expression_system_taxid: 562

Molecule: Dna (5'-D(Cpapgpgpaptpcpcpt)-3')
Chain: C, D
Engineered: Yes

Synthetic: Yes
Organism_scientific: Synthetic Construct
Organism_taxid: 32630
symmetry Space Group: P 21 21 21
R_factor 0.212 R_Free 0.263
length a length b length c angle alpha angle beta angle gamma
58.706 75.441 108.450 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.25 Å
ligand DGT, MN, SO4 enzyme
A, B
  • DNA-directed DNA polymerase ...

  • Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (144 Kb) [Save to disk]
  • Biological Unit Coordinates (5hrf.pdb1.gz) 137 Kb
  • LPC: Ligand-Protein Contacts for 5HRF
  • CSU: Contacts of Structural Units for 5HRF
  • Structure Factors (579 Kb)
  • Retrieve 5HRF in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 5HRF from S2C, [Save to disk]
  • Re-refined 5hrf structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 5HRF in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 5HRF
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • Fold representative 5hrf from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5hrf_B] [5hrf_C] [5hrf_D] [5hrf_A] [5hrf]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 5HRF
  • Community annotation for 5HRF at PDBWiki (http://pdbwiki.org)

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