5HRK Transferase Dna date Jan 23, 2016
title The Crystal Structure Of Asfvpolx(H115f Mutant): 1nt-Gap(P) Ternary Complex
authors Y.Q.Chen, J.Zhang, J.H.Gan
compound source
Molecule: Dna Polymerase Beta-Like Protein
Chain: A, B
Synonym: Po174l, Polx
Engineered: Yes
Mutation: Yes
 Organism_scientific: African Swine Fever Virus
Organism_common: Asfv
Organism_taxid: 10497
Gene: O174l
Expression_system: Escherichia Coli
Expression_system_taxid: 469008
Expression_system_strain: Bl21(De3)

Molecule: Dna (5'-D(Gptpgpapgptpapcpa)-3')
Chain: F, C
Engineered: Yes
Synthetic: Yes
Organism_scientific: Synthetic Construct
Organism_taxid: 32630

Molecule: Dna (5'- D(Cpgptptpcptpaptpgptpgptpapcptpcpapc)-3'
Chain: H, E
Engineered: Yes
Synthetic: Yes
Organism_scientific: Synthetic Construct
Organism_taxid: 32630

Molecule: Dna (5'-D(Paptpapgpapapcpg)-3')
Chain: G, D
Engineered: Yes
Synthetic: Yes
Organism_scientific: Synthetic Construct
Organism_taxid: 32630
symmetry Space Group: C 1 2 1
R_factor 0.233 R_Free 0.273
crystal
cell
length a length b length c angle alpha angle beta angle gamma
106.726 87.196 82.616 90.00 97.59 90.00
method X-Ray Diffractionresolution 2.90 Å
ligand DGT, MN, SO4 enzyme
Gene
Ontology
ChainFunctionProcessComponent
A, B
  • DNA-directed DNA polymerase ...


    • Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (183 Kb) [Save to disk]
  • Biological Unit Coordinates (5hrk.pdb1.gz) 89 Kb
  • Biological Unit Coordinates (5hrk.pdb2.gz) 90 Kb
  • LPC: Ligand-Protein Contacts for 5HRK
  • CSU: Contacts of Structural Units for 5HRK
  • Structure Factors (291 Kb)
  • Retrieve 5HRK in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 5HRK from S2C, [Save to disk]
  • Re-refined 5hrk structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 5HRK in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 5HRK
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5hrk_H] [5hrk_F] [5hrk_B] [5hrk_D] [5hrk_C] [5hrk] [5hrk_G] [5hrk_A] [5hrk_E]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
    • Other resources with information on 5HRK
  • Community annotation for 5HRK at PDBWiki (http://pdbwiki.org)

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