5HRW	Transcription	date	Jan 24, 2016
title	Crystal Structure Of The Fifth Bromodomain Of Human Pb1 In C With 1-Propylisochromeno[3,4-C]Pyrazol-5(2h)-One) Compound
authors	C.Tallant, V.Myrianthopoulos, N.Gaboriaud-Kolar, J.A.Newman, S.P F.Von Delft, C.H.Arrowsmith, A.M.Edwards, C.Bountra, E.Mikros, S
compound		source
Molecule: Protein Polybromo-1 Chain: A, B Fragment: Unp Residues 613-734 Synonym: Hpb1,Brg1-Associated Factor 180,Baf180,Polybromo-1 Fifth Bromodomain; Engineered: Yes		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Gene: Pbrm1, Baf180, Pb1 Expression_system: Escherichia Coli Expression_system_taxid: 562 Expression_system_vector_type: Plasmid Expression_system_plasmid: Pnic28-Bsa4
symmetry	Space Group: P 21 21 21	R_factor 0.202 R_Free 0.236
crystal cell	length a length b length c angle alpha angle beta angle gamma 41.111 59.101 105.485 90.00 90.00 90.00
method	X-Ray Diffraction	resolution	1.80 Å
ligand	64E, EDO, SO4	enzyme
Gene Ontology	Chain Function Process Component A, B
Primary reference	Discovery and Optimization of a Selective Ligand for the Switch/Sucrose Nonfermenting-Related Bromodomains of Polybromo Protein-1 by the Use of Virtual Screening and Hydration Analysis., Myrianthopoulos V, Gaboriaud-Kolar N, Tallant C, Hall ML, Grigoriou S, Brownlee PM, Fedorov O, Rogers C, Heidenreich D, Wanior M, Drosos N, Mexia N, Savitsky P, Bagratuni T, Kastritis E, Terpos E, Filippakopoulos P, Muller S, Skaltsounis AL, Downs JA, Knapp S, Mikros E, J Med Chem. 2016 Oct 13;59(19):8787-8803. Epub 2016 Sep 27. PMID:27617704

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (80 Kb) [Save to disk] Biological Unit Coordinates (5hrw.pdb1.gz) 39 Kb Biological Unit Coordinates (5hrw.pdb2.gz) 38 Kb LPC: Ligand-Protein Contacts for 5HRW CSU: Contacts of Structural Units for 5HRW Structure Factors (505 Kb) Retrieve 5HRW in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 5HRW from S2C, [Save to disk] Re-refined 5hrw structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 5HRW in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 5HRW

Ramachandran plot from PDBSum

Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [5hrw] [5hrw_A] [5hrw_B] SWISS-PROT database: Domain organization of by SWISSPFAM Domain found in 5HRW: [BROMO ] by SMART

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