5HTD Transport Protein date Jan 26, 2016
title Recombinant Bovine Beta-Lactoglobulin Variant L1ai2s With E Ligand (Sblgb#1)
authors J.I.Loch, P.Bonarek, M.Tworzydlo, A.Polit, B.Hawro, A.Lach, E.Ludw K.Lewinski
compound source
Molecule: Beta-Lactoglobulin
Chain: A
Synonym: Beta-Lg
Engineered: Yes
Mutation: Yes
 Organism_scientific: Bos Taurus
Organism_common: Bovine
Organism_taxid: 9913
Gene: Lgb
Expression_system: Escherichia Coli Bl21(De3)
Expression_system_taxid: 469008
Expression_system_variant: Origami B
Expression_system_vector_type: Plasmid
Expression_system_vector: Petduet-1
symmetry Space Group: P 32 2 1
R_factor 0.201 R_Free 0.272
crystal
cell
length a length b length c angle alpha angle beta angle gamma
53.486 53.486 111.039 90.00 90.00 120.00
method X-Ray Diffractionresolution 2.50 Å
ligand MYR enzyme
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceEngineered beta-Lactoglobulin Produced in E. coli: Purification, Biophysical and Structural Characterisation., Loch JI, Bonarek P, Tworzydlo M, Polit A, Hawro B, Lach A, Ludwin E, Lewinski K, Mol Biotechnol. 2016 Jul 5. PMID:27380951
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (31 Kb) [Save to disk]
  • Biological Unit Coordinates (5htd.pdb1.gz) 52 Kb
  • LPC: Ligand-Protein Contacts for 5HTD
  • CSU: Contacts of Structural Units for 5HTD
  • Structure Factors (139 Kb)
  • Retrieve 5HTD in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 5HTD from S2C, [Save to disk]
  • Re-refined 5htd structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 5HTD in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 5HTD
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5htd] [5htd_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
    • Other resources with information on 5HTD
  • Community annotation for 5HTD at PDBWiki (http://pdbwiki.org)

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