5HU0 Hydrolase Hydrolase Inhibitor date Jan 27, 2016
title Bace1 In Complex With 4-(3-(Furan-2-Carboxamido)Phenyl)-1-Me Oxo-4-Phenylimidazolidin-2-Iminium
authors P.Orth
compound source
Molecule: Beta-Secretase 1
Chain: A, B
Fragment: Unp Residues 43-454
Synonym: Aspartyl Protease 2,Asp 2,Beta-Site Amyloid Precur Protein Cleaving Enzyme 1,Beta-Site App Cleaving Enzyme 1,M Membrane-Associated Aspartic Protease 2;
Ec: 3.4.23.46
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Bace1, Bace, Kiaa1149
Expression_system: Escherichia Coli
Expression_system_taxid: 562
symmetry Space Group: P 21 21 21
R_factor 0.169 R_Free 0.199
crystal
cell
length a length b length c angle alpha angle beta angle gamma
86.475 89.822 131.134 90.00 90.00 90.00
method X-Ray Diffractionresolution 1.83 Å
ligand 66H, TLA enzyme Hydrolase E.C.3.4.23.46 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A, B


Primary referenceDiscovery of the 3-Imino-1,2,4-thiadiazinane 1,1-Dioxide Derivative Verubecestat (MK-8931)-A beta-Site Amyloid Precursor Protein Cleaving Enzyme 1 Inhibitor for the Treatment of Alzheimer's Disease., Scott JD, Li SW, Brunskill AP, Chen X, Cox K, Cumming JN, Forman M, Gilbert EJ, Hodgson RA, Hyde LA, Jiang Q, Iserloh U, Kazakevich I, Kuvelkar R, Mei H, Meredith J, Misiaszek J, Orth P, Rossiter LM, Slater M, Stone J, Strickland CO, Voigt JH, Wang G, Wang H, Wu Y, Greenlee WJ, Parker EM, Kennedy ME, Stamford AW, J Med Chem. 2016 Dec 8;59(23):10435-10450. Epub 2016 Nov 18. PMID:27933948
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (149 Kb) [Save to disk]
  • Biological Unit Coordinates (5hu0.pdb1.gz) 74 Kb
  • Biological Unit Coordinates (5hu0.pdb2.gz) 74 Kb
  • LPC: Ligand-Protein Contacts for 5HU0
  • CSU: Contacts of Structural Units for 5HU0
  • Structure Factors (2484 Kb)
  • Retrieve 5HU0 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 5HU0 from S2C, [Save to disk]
  • Re-refined 5hu0 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 5HU0 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 5HU0
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5hu0_A] [5hu0] [5hu0_B]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 5HU0
  • Community annotation for 5HU0 at PDBWiki (http://pdbwiki.org)

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