5HYO Viral Protein date Feb 01, 2016
title X-Ray Structure Of Unbound Porcine Epidemic Diarrhea Virus 3
authors S.E.St John, A.D.Mesecar
compound source
Molecule: Pedv 3clpro
Chain: A, B
Synonym: Polyprotein
Engineered: Yes
 Organism_scientific: Porcine Epidemic Diarrhea Virus
Organism_taxid: 28295
Expression_system: Escherichia Coli
Expression_system_taxid: 562
symmetry Space Group: P 21 21 21
R_factor 0.204 R_Free 0.269
crystal
cell
length a length b length c angle alpha angle beta angle gamma
58.586 76.292 119.169 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.10 Å
ligand DMS, IPA, MPD enzyme
Gene
Ontology
ChainFunctionProcessComponent
A, B


Primary referenceX-Ray Structure and Inhibition of 3C-like Protease from Porcine Epidemic Diarrhea Virus., St John SE, Anson BJ, Mesecar AD, Sci Rep. 2016 May 13;6:25961. doi: 10.1038/srep25961. PMID:27173881
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (102 Kb) [Save to disk]
  • Biological Unit Coordinates (5hyo.pdb1.gz) 97 Kb
  • LPC: Ligand-Protein Contacts for 5HYO
  • CSU: Contacts of Structural Units for 5HYO
  • Structure Factors (597 Kb)
  • Retrieve 5HYO in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 5HYO from S2C, [Save to disk]
  • Re-refined 5hyo structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 5HYO in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 5HYO
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5hyo_A] [5hyo_B] [5hyo]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
    • Other resources with information on 5HYO
  • Community annotation for 5HYO at PDBWiki (http://pdbwiki.org)

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