5HYT Immune System date Feb 01, 2016
title Structure Of Human C4b-Binidng Protein Alpha Chain Ccp Domai In Complex With The Hypervariable Region Of Group A Strepto Protein
authors C.Z.Buffalo, A.J.Bahn-Suh, P.Ghosh
compound source
Molecule: Precursor To Protein Sir22
Chain: A, C, G, E
Fragment: Unp Residues 48-126
Engineered: Yes
Organism_scientific: Streptococcus Pyogenes
Organism_taxid: 1314
Gene: Sir22
Expression_system: Escherichia Coli
Expression_system_taxid: 562

Molecule: C4b-Binding Protein Alpha Chain
Chain: B, D, F, H
Fragment: Unp Residues 49-172
Synonym: C4bp,Proline-Rich Protein,Prp
Engineered: Yes

Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: C4bpa, C4bp
Expression_system: Escherichia Coli
Expression_system_taxid: 562
symmetry Space Group: P 21 21 21
R_factor 0.213 R_Free 0.274
crystal
cell
length a length b length c angle alpha angle beta angle gamma
68.079 80.348 152.940 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.54 Å
Primary referenceConserved patterns hidden within group A Streptococcus M protein hypervariability recognize human C4b-binding protein., Buffalo CZ, Bahn-Suh AJ, Hirakis SP, Biswas T, Amaro RE, Nizet V, Ghosh P, Nat Microbiol. 2016 Sep 5:16155. doi: 10.1038/nmicrobiol.2016.155. PMID:27595425
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (215 Kb) [Save to disk]
  • Biological Unit Coordinates (5hyt.pdb1.gz) 103 Kb
  • Biological Unit Coordinates (5hyt.pdb2.gz) 103 Kb
  • CSU: Contacts of Structural Units for 5HYT
  • Structure Factors (460 Kb)
  • Retrieve 5HYT in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 5HYT from S2C, [Save to disk]
  • Re-refined 5hyt structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 5HYT in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 5HYT
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5hyt_H] [5hyt] [5hyt_B] [5hyt_C] [5hyt_G] [5hyt_D] [5hyt_F] [5hyt_A] [5hyt_E]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domain found in 5HYT: [CCP ] by SMART
  • Other resources with information on 5HYT
  • Community annotation for 5HYT at PDBWiki (http://pdbwiki.org)

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