5I0L Hydrolase date Feb 04, 2016
title Crystal Structure Of The Catalytic Domain Of Mmp-12 In Compl Selective Sugar-Conjugated Arylsulfonamide Carboxylate Wate Inhibitor (Dc27).
authors E.A.Stura, L.Rosalia, D.Cuffaro, L.Tepshi, L.Ciccone, A.Rossello
compound source
Molecule: Macrophage Metalloelastase
Chain: A, B
Fragment: Unp Residues 106-263
Synonym: Mme,Macrophage Elastase,Hme,Matrix Metalloproteina 12;
Ec: 3.4.24.65
Engineered: Yes
Mutation: Yes
Other_details: Catalytic Domain Of Mmp-12 With F171d Mutati
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Tissue: Macrophage
Gene: Mmp12, Hme
Expression_system: Escherichia Coli Bl21(De3)
Expression_system_taxid: 469008
Expression_system_variant: Star
symmetry Space Group: P 1 21 1
R_factor 0.175 R_Free 0.253
crystal
cell
length a length b length c angle alpha angle beta angle gamma
39.090 62.860 63.750 90.00 102.54 90.00
method X-Ray Diffractionresolution 2.45 Å
ligand CA, DMS, EDO, H27, PEG, PGO, ZN enzyme Hydrolase E.C.3.4.24.65 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A, B


Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (126 Kb) [Save to disk]
  • Biological Unit Coordinates (5i0l.pdb1.gz) 62 Kb
  • Biological Unit Coordinates (5i0l.pdb2.gz) 60 Kb
  • LPC: Ligand-Protein Contacts for 5I0L
  • CSU: Contacts of Structural Units for 5I0L
  • Structure Factors (219 Kb)
  • Retrieve 5I0L in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 5I0L from S2C, [Save to disk]
  • Re-refined 5i0l structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 5I0L in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 5I0L
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5i0l_A] [5i0l] [5i0l_B]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domain found in 5I0L: [ZnMc ] by SMART
  • Other resources with information on 5I0L
  • Community annotation for 5I0L at PDBWiki (http://pdbwiki.org)

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