5I17 Immune System date Feb 05, 2016
title Crystal Structure Of Human Germline Antibody Ighv1-69igkv3-
authors A.Teplyakov, G.Obmolova, T.Malia, J.Luo, G.Gilliland
compound source
Molecule: Fab Light Chain
Chain: L, A
Engineered: Yes
 Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Expression_system: Homo Sapiens
Expression_system_common: Human
Expression_system_taxid: 9606

Molecule: Fab Heavy Chain
Chain: H, B
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Expression_system: Homo Sapiens
Expression_system_common: Human
Expression_system_taxid: 9606
symmetry Space Group: P 4 2 2
R_factor 0.202 R_Free 0.247
crystal
cell
length a length b length c angle alpha angle beta angle gamma
152.480 152.480 123.370 90.00 90.00 90.00
method X-Ray Diffractionresolution 3.30 Å
ligand PCA, SO4 enzyme
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (136 Kb) [Save to disk]
  • Biological Unit Coordinates (5i17.pdb1.gz) 67 Kb
  • Biological Unit Coordinates (5i17.pdb2.gz) 68 Kb
  • LPC: Ligand-Protein Contacts for 5I17
  • CSU: Contacts of Structural Units for 5I17
  • Structure Factors (269 Kb)
  • Retrieve 5I17 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 5I17 from S2C, [Save to disk]
  • Re-refined 5i17 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 5I17 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 5I17
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5i17_L] [5i17] [5i17_H] [5i17_B] [5i17_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domains found in 5I17: [IG_like] [IGv ] by SMART
    • Other resources with information on 5I17
  • Community annotation for 5I17 at PDBWiki (http://pdbwiki.org)

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