OCA Atlas for 5I20

5I20

date

authors

compound

source

symmetry

R_factor

R_Free

crystal
cell

length a	length b	length c	angle alpha	angle beta	angle gamma

method

X-Ray Diffraction

resolution

ligand

OLC, SO4

enzyme

Gene

SNOV

Gene
Ontology

Chain	Function	Process	Component
B, D, E, A, C, F

Primary reference

Structural basis for amino acid export by DMT superfamily transporter YddG., Tsuchiya H, Doki S, Takemoto M, Ikuta T, Higuchi T, Fukui K, Usuda Y, Tabuchi E, Nagatoishi S, Tsumoto K, Nishizawa T, Ito K, Dohmae N, Ishitani R, Nureki O, Nature. 2016 May 30;534(7607):417-20. doi: 10.1038/nature17991. PMID:27281193

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (493 Kb) [Save to disk]

Biological Unit Coordinates (5i20.pdb1.gz) 88 Kb

Biological Unit Coordinates (5i20.pdb2.gz) 87 Kb

Biological Unit Coordinates (5i20.pdb3.gz) 87 Kb

Biological Unit Coordinates (5i20.pdb4.gz) 85 Kb

Biological Unit Coordinates (5i20.pdb5.gz) 90 Kb

Biological Unit Coordinates (5i20.pdb6.gz) 66 Kb

LPC: Ligand-Protein Contacts for 5I20

CSU: Contacts of Structural Units for 5I20

Structure Factors (683 Kb)

Retrieve 5I20 in mmCIF format [Save to disk]

SEQRES to COORDINATES correlation for 5I20 from S2C, [Save to disk]

Re-refined 5i20 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 5I20 in 3D

Proteopedia, because life has more than 2D.

On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.

On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Structure-derived information

Dipole moment, from Dipole Server at Weizmann Institute

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [5i20] [5i20_A] [5i20_B] [5i20_C] [5i20_D] [5i20_E] [5i20_F]

SWISS-PROT database:

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