5I24 Hydrolase date Feb 08, 2016
title Crystal Structure Of Agd31b, Alpha-Transglucosylase In Glyco Hydrolase Family 31, In Complex With Cyclophellitol Aziridi Cf021
authors L.Wu, G.J.Davies
compound source
Molecule: Oligosaccharide 4-Alpha-D-Glucosyltransferase
Chain: A
Synonym: Alpha-Glucosidase 31b,Cjagd31b
Ec: 2.4.1.161
Engineered: Yes
Organism_scientific: Cellvibrio Japonicus (Strain Ueda107)
Organism_taxid: 498211
Strain: Ueda107
Gene: Agd31b, Cja_3248
Expression_system: Escherichia Coli Bl21(De3)
Expression_system_taxid: 469008
symmetry Space Group: P 6 2 2
R_factor 0.169 R_Free 0.188
crystal
cell
length a length b length c angle alpha angle beta angle gamma
197.300 197.300 102.900 90.00 90.00 120.00
method X-Ray Diffractionresolution 1.85 Å
ligand 66U, EDO, PG4, SO4, TRS enzyme Transferase E.C.2.4.1.161 BRENDA
Gene CJA
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceDetection of Active Mammalian GH31 alpha-Glucosidases in Health and Disease Using In-Class, Broad-Spectrum Activity-Based Probes., Jiang J, Kuo CL, Wu L, Franke C, Kallemeijn WW, Florea BI, van Meel E, van der Marel GA, Codee JD, Boot RG, Davies GJ, Overkleeft HS, Aerts JM, ACS Cent Sci. 2016 May 25;2(5):351-8. doi: 10.1021/acscentsci.6b00057. Epub 2016 , Apr 26. PMID:27280170
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (273 Kb) [Save to disk]
  • Biological Unit Coordinates (5i24.pdb1.gz) 266 Kb
  • LPC: Ligand-Protein Contacts for 5I24
  • CSU: Contacts of Structural Units for 5I24
  • Structure Factors (6859 Kb)
  • Retrieve 5I24 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 5I24 from S2C, [Save to disk]
  • Re-refined 5i24 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 5I24 in 3D
  • Proteopedia, because life has more than 2D.
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  • Visual 3D analysis of 5I24
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5i24_A] [5i24]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 5I24
  • Community annotation for 5I24 at PDBWiki (http://pdbwiki.org)

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