5I2Y Protein Binding date Feb 09, 2016
title Crystal Structure Of Tpp1 K170a
authors J.Nandakumar, E.M.Smith
compound source
Molecule: Adrenocortical Dysplasia Protein Homolog
Chain: A, B
Fragment: Ob Domain
Synonym: Pot1 And Tin2-Interacting Protein
Engineered: Yes
Mutation: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Acd, Pip1, Ptop, Tint1, Tpp1
Expression_system: Escherichia Coli
Expression_system_taxid: 469008
Expression_system_strain: Bl21(De3)
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pet-Smt3
symmetry Space Group: I 41 2 2
R_factor 0.194 R_Free 0.235
length a length b length c angle alpha angle beta angle gamma
119.197 119.197 171.350 90.00 90.00 90.00
method X-Ray Diffractionresolution 3.00 Å
A, B

Primary referenceStructural and functional consequences of a disease mutation in the telomere protein TPP1., Bisht K, Smith EM, Tesmer VM, Nandakumar J, Proc Natl Acad Sci U S A. 2016 Nov 15;113(46):13021-13026. Epub 2016 Nov 2. PMID:27807141
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (50 Kb) [Save to disk]
  • Biological Unit Coordinates (5i2y.pdb1.gz) 25 Kb
  • Biological Unit Coordinates (5i2y.pdb2.gz) 22 Kb
  • Biological Unit Coordinates (5i2y.pdb3.gz) 46 Kb
  • CSU: Contacts of Structural Units for 5I2Y
  • Structure Factors (829 Kb)
  • Retrieve 5I2Y in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 5I2Y from S2C, [Save to disk]
  • Re-refined 5i2y structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 5I2Y in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 5I2Y
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • Fold representative 5i2y from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5i2y_B] [5i2y_A] [5i2y]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 5I2Y
  • Community annotation for 5I2Y at PDBWiki (http://pdbwiki.org)

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