5I35 Transferase date Feb 09, 2016
title Structure Of The Human Mitochondrial Kinase Coq8a R611k With (Cerebellar Ataxia And Ubiquinone Deficiency Through Loss O Unorthodox Kinase Activity)
authors C.A.Bingman, J.A.Stefely, D.J.Pagliarini, Mitochondrial Protein Partnership (Mpp)
compound source
Molecule: Atypical Kinase Adck3, Mitochondrial
Chain: A
Synonym: Chaperone Activity Of Bc1 Complex-Like,Chaperone-A Aarf Domain-Containing Protein Kinase 3;
Ec: 2.7.-.-
Engineered: Yes
Mutation: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Adck3, Cabc1, Pp265
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_strain: B834
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pvp68k
symmetry Space Group: C 1 2 1
R_factor 0.183 R_Free 0.259
crystal
cell
length a length b length c angle alpha angle beta angle gamma
150.050 59.120 51.000 90.00 97.69 90.00
method X-Ray Diffractionresolution 2.30 Å
ligand ANP, MSE enzyme Transferase E.C.2.7 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceCerebellar Ataxia and Coenzyme Q Deficiency through Loss of Unorthodox Kinase Activity., Stefely JA, Licitra F, Laredj L, Reidenbach AG, Kemmerer ZA, Grangeray A, Jaeg-Ehret T, Minogue CE, Ulbrich A, Hutchins PD, Wilkerson EM, Ruan Z, Aydin D, Hebert AS, Guo X, Freiberger EC, Reutenauer L, Jochem A, Chergova M, Johnson IE, Lohman DC, Rush MJ, Kwiecien NW, Singh PK, Schlagowski AI, Floyd BJ, Forsman U, Sindelar PJ, Westphall MS, Pierrel F, Zoll J, Dal Peraro M, Kannan N, Bingman CA, Coon JJ, Isope P, Puccio H, Pagliarini DJ, Mol Cell. 2016 Aug 18;63(4):608-20. doi: 10.1016/j.molcel.2016.06.030. Epub 2016 , Aug 4. PMID:27499294
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (138 Kb) [Save to disk]
  • Biological Unit Coordinates (5i35.pdb1.gz) 132 Kb
  • LPC: Ligand-Protein Contacts for 5I35
  • CSU: Contacts of Structural Units for 5I35
  • Structure Factors (428 Kb)
  • Retrieve 5I35 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 5I35 from S2C, [Save to disk]
  • Re-refined 5i35 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 5I35 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 5I35
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • Fold representative 5i35 from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5i35] [5i35_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 5I35
  • Community annotation for 5I35 at PDBWiki (http://pdbwiki.org)

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