5I3L	Peptide Binding Protein	date	Feb 10, 2016
title	Dpf3b In Complex With H3k14ac Peptide
authors	W.Tempel, Y.Liu, J.R.Walker, A.Zhao, S.Qin, P.Loppnau, C.Bountra, C.H.Arrowsmith, A.M.Edwards, J.Min, Structural Genomics Consor (Sgc)
compound		source
Molecule: Zinc Finger Protein Dpf3 Chain: A, B Synonym: Brg1-Associated Factor 45c,Baf45c,Zinc Finger Prot D4; Engineered: Yes		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Gene: Dpf3, Baf45c, Cerd4 Expression_system: Escherichia Coli Expression_system_taxid: 469008 Expression_system_strain: Bl21(De3)-V2r-Prare2 Expression_system_plasmid: Pet28-Mhl
Molecule: H3k14ac Peptide Chain: C Engineered: Yes		Synthetic: Yes Organism_scientific: Synthetic Construct Organism_taxid: 32630 Other_details: Synthetic Peptide
symmetry	Space Group: C 2 2 21	R_factor 0.182 R_Free 0.212
crystal cell	length a length b length c angle alpha angle beta angle gamma 99.822 121.641 56.446 90.00 90.00 90.00
method	X-Ray Diffraction	resolution	1.85 Å
ligand	ALY, EDO, NA, UNX, ZN	enzyme
Gene Ontology	Chain Function Process Component A, B C
Primary reference	Crystal structure of DPF3b in complex with an acetylated histone peptide., Li W, Zhao A, Tempel W, Loppnau P, Liu Y, J Struct Biol. 2016 Jul 16. pii: S1047-8477(16)30142-3. doi:, 10.1016/j.jsb.2016.07.001. PMID:27402533

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (87 Kb) [Save to disk] Biological Unit Coordinates (5i3l.pdb1.gz) 80 Kb LPC: Ligand-Protein Contacts for 5I3L CSU: Contacts of Structural Units for 5I3L Structure Factors (5025 Kb) Retrieve 5I3L in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 5I3L from S2C, [Save to disk] Re-refined 5i3l structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 5I3L in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 5I3L

Ramachandran plot from PDBSum

Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [5i3l_A] [5i3l] [5i3l_B] [5i3l_C] SWISS-PROT database: Domain organization of by SWISSPFAM Domains found in 5I3L: [PHD] [RING ] by SMART

Other resources with information on 5I3L

Community annotation for 5I3L at PDBWiki (http://pdbwiki.org)

You may enter another PDB ID code

Go [Back], to the [PDB Lite page], to the [OCA Search page] or to the [PDB Home page]

---

OCA© by Jaime Prilusky, 1996-2014,2022 Bioinformatics Unit Weizmann Institute of Science

---