5I3R Transferase Transferase Inhibitor date Feb 10, 2016
title Crystal Structure Of Bmp-2-Inducible Kinase In Complex With Indazole Inhibitor
authors R.M.Counago, F.J.Sorrell, T.Krojer, P.Savitsky, J.M.Elkins, A.Axt D.Drewry, C.Wells, C.Zhang, W.Zuercher, T.M.Willson, C.H.Arrowsm A.M.Edwards, C.Bountra, P.Arruda, O.Gileadi, Structural Genomic Consortium (Sgc)
compound source
Molecule: Bmp-2-Inducible Protein Kinase
Chain: A, B
Synonym: Bike
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Bmp2k, Bike, Hrihfb2017
Expression_system: Escherichia Coli
Expression_system_taxid: 469008
Expression_system_strain: Bl21(De3)
symmetry Space Group: P 43 21 2
R_factor 0.185 R_Free 0.231
length a length b length c angle alpha angle beta angle gamma
78.433 78.433 255.221 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.40 Å
ligand IDK, PO4 enzyme Transferase E.C. BRENDA
A, B

Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (213 Kb) [Save to disk]
  • Biological Unit Coordinates (5i3r.pdb1.gz) 103 Kb
  • Biological Unit Coordinates (5i3r.pdb2.gz) 104 Kb
  • LPC: Ligand-Protein Contacts for 5I3R
  • CSU: Contacts of Structural Units for 5I3R
  • Structure Factors (2045 Kb)
  • Retrieve 5I3R in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 5I3R from S2C, [Save to disk]
  • Re-refined 5i3r structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 5I3R in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 5I3R
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • Fold representative 5i3r from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5i3r] [5i3r_B] [5i3r_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domain found in 5I3R: [STYKc ] by SMART
  • Other resources with information on 5I3R
  • Community annotation for 5I3R at PDBWiki (http://pdbwiki.org)

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