5I6J Signaling Protein date Feb 16, 2016
title Crystal Structure Of Srgap2 F-Barx
authors M.Sporny, J.Guez-Haddad, M.N.Isupov, Y.Opatowsky
compound source
Molecule: Slit-Robo Rho Gtpase-Activating Protein 2
Chain: A
Synonym: Srgap2,Formin-Binding Protein 2,Rho Gtpase-Activat Protein 34;
Engineered: Yes
 Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Srgap2, Arhgap34, Fnbp2, Kiaa0456, Srgap2a
Expression_system: Escherichia Coli Bl21(De3)
Expression_system_taxid: 469008
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Phis Parallel
symmetry Space Group: C 1 2 1
R_factor 0.203 R_Free 0.263
crystal
cell
length a length b length c angle alpha angle beta angle gamma
203.170 29.900 94.730 90.00 91.87 90.00
method X-Ray Diffractionresolution 2.70 Å
Primary referenceStructural History of Human SRGAP2 Proteins., Sporny M, Guez-Haddad J, Kreusch A, Shakartzi S, Neznansky A, Cross A, Isupov MN, Qualmann B, Kessels MM, Opatowsky Y, Mol Biol Evol. 2017 Feb 21. doi: 10.1093/molbev/msx094. PMID:28333212
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (75 Kb) [Save to disk]
  • Biological Unit Coordinates (5i6j.pdb1.gz) 138 Kb
  • CSU: Contacts of Structural Units for 5I6J
  • Structure Factors (732 Kb)
  • Retrieve 5I6J in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 5I6J from S2C, [Save to disk]
  • Re-refined 5i6j structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 5I6J in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 5I6J
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5i6j_A] [5i6j]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
    • Other resources with information on 5I6J
  • Community annotation for 5I6J at PDBWiki (http://pdbwiki.org)

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