5I6X Membrane Protein date Feb 16, 2016
title X-Ray Structure Of The Ts3 Human Serotonin Transporter Compl Paroxetine At The Central Site
authors J.A.Coleman, E.M.Green, E.Gouaux
compound source
Molecule: Sodium-Dependent Serotonin Transporter
Chain: A
Synonym: Sert,5ht Transporter,5htt,Solute Carrier Family 6
Engineered: Yes
Mutation: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Slc6a4, Htt, Sert
Expression_system: Homo Sapiens
Expression_system_taxid: 9606

Molecule: 8b6 Antibody, Heavy Chain
Chain: B
Engineered: Yes

Organism_scientific: Mus Musculus
Organism_taxid: 10090
Expression_system: Spodoptera Frugiperda
Expression_system_taxid: 7108

Molecule: 8b6 Antibody, Light Chain
Chain: C
Engineered: Yes

Organism_scientific: Mus Musculus
Organism_taxid: 10090
Expression_system: Spodoptera Frugiperda
Expression_system_taxid: 7108
symmetry Space Group: C 2 2 21
R_factor 0.238 R_Free 0.270
crystal
cell
length a length b length c angle alpha angle beta angle gamma
129.150 162.830 140.410 90.00 90.00 90.00
method X-Ray Diffractionresolution 3.14 Å
ligand 8PR, CL, CLR, LMT, NA, NAG enzyme
subcellular loc. Membrane localization by OPM: Eukaryotic plasma membrane
extracellular side
cytoplasmic side
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceX-ray structures and mechanism of the human serotonin transporter., Coleman JA, Green EM, Gouaux E, Nature. 2016 Apr 21;532(7599):334-9. doi: 10.1038/nature17629. Epub 2016 Apr 6. PMID:27049939
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (342 Kb) [Save to disk]
  • Biological Unit Coordinates (5i6x.pdb1.gz) 334 Kb
  • LPC: Ligand-Protein Contacts for 5I6X
  • CSU: Contacts of Structural Units for 5I6X
  • Structure Factors (419 Kb)
  • Retrieve 5I6X in mmCIF format [Save to disk]
  • Re-refined 5i6x structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 5I6X in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 5I6X
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • Fold representative 5i6x from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5i6x_B] [5i6x_C] [5i6x] [5i6x_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domains found in 5I6X: [IG_like] [IGv ] by SMART
  • Other resources with information on 5I6X
  • Community annotation for 5I6X at PDBWiki (http://pdbwiki.org)

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