5I8W Oxidoreductase date Feb 19, 2016
title Crystal Structure Of B. Pseudomallei Fabi In Complex With Na Pt401
authors M.W.Hirschbeck, S.Eltschkner, P.J.Tonge, C.Kisker
compound source
Molecule: Enoyl-[Acyl-Carrier-Protein] Reductase [Nadh]
Chain: A
Ec: 1.3.1.9
Engineered: Yes
 Organism_scientific: Burkholderia Pseudomallei
Organism_taxid: 28450
Gene: Fabi, Fabi_2, Act79_25590, Am256_11615, Am257_11635, Ams56_08605, Dp46_2957, Dp49_6839, Ers012314_03793, Ers0123 Sy87_14645, Tr70_1075, Vu09_13745;
Expression_system: Escherichia Coli
Expression_system_taxid: 562
symmetry Space Group: I 2 2 2
R_factor 0.163 R_Free 0.192
crystal
cell
length a length b length c angle alpha angle beta angle gamma
74.700 75.690 88.360 90.00 90.00 90.00
method X-Ray Diffractionresolution 1.63 Å
ligand 69H, NAD enzyme Oxidoreductase E.C.1.3.1.9 BRENDA
Gene ACT79 ; AM256 ; AM257 ; AMS56 ; DP46 ; DP49 ; ERS012314 ; ERS012372 ; FABI ; SY87 ; TR70 ; VU09
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceRational Optimization of Diphenyl Ether Binding Kinetics to the Enoyl-ACP Reductase FabI1 from Burkholderia pseudomallei., Neckles CM, Eltschkner S, Cummings JE, Hirschbeck M, Daryaee F, Bommineni GR, Zhang Z, Spagnuolo LA, Yu W, Davoodi S, Slayden RA, Kisker C, Tonge PJ, Biochemistry. 2017 Feb 22. doi: 10.1021/acs.biochem.6b01048. PMID:28225601
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (90 Kb) [Save to disk]
  • Biological Unit Coordinates (5i8w.pdb1.gz) 330 Kb
  • LPC: Ligand-Protein Contacts for 5I8W
  • CSU: Contacts of Structural Units for 5I8W
  • Structure Factors (1980 Kb)
  • Retrieve 5I8W in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 5I8W from S2C, [Save to disk]
  • Re-refined 5i8w structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 5I8W in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 5I8W
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5i8w] [5i8w_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
    • Other resources with information on 5I8W
  • Community annotation for 5I8W at PDBWiki (http://pdbwiki.org)

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